Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3279 and Dsui_3280 are separated by 89 nucleotides Dsui_3280 and Dsui_3281 overlap by 4 nucleotides Dsui_3281 and Dsui_3282 are separated by 13 nucleotides
Dsui_3279: Dsui_3279 - formate dehydrogenase family accessory protein FdhD, at 3,516,399 to 3,517,352
_3279
Dsui_3280: Dsui_3280 - formate dehydrogenase, gamma subunit, at 3,517,442 to 3,518,062
_3280
Dsui_3281: Dsui_3281 - formate dehydrogenase, beta subunit, Fe-S containing, at 3,518,059 to 3,518,949
_3281
Dsui_3282: Dsui_3282 - formate dehydrogenase, alpha subunit, at 3,518,963 to 3,522,016
_3282
Position (kb)
3517
3518
3519 Strain fitness (log2 ratio)
-2
-1
0
1 at 3516.453 kb on + strand at 3516.461 kb on - strand at 3516.472 kb on - strand at 3516.516 kb on + strand at 3516.538 kb on - strand, within Dsui_3279 at 3516.656 kb on + strand at 3516.671 kb on + strand at 3516.679 kb on - strand, within Dsui_3279 at 3516.773 kb on + strand at 3516.781 kb on - strand, within Dsui_3279 at 3517.064 kb on - strand, within Dsui_3279 at 3517.075 kb on - strand, within Dsui_3279 at 3517.090 kb on - strand, within Dsui_3279 at 3517.122 kb on + strand at 3517.130 kb on - strand, within Dsui_3279 at 3517.130 kb on - strand, within Dsui_3279 at 3517.206 kb on + strand at 3517.238 kb on - strand, within Dsui_3279 at 3517.267 kb on - strand at 3517.286 kb on + strand at 3517.361 kb on + strand at 3517.361 kb on + strand at 3517.369 kb on + strand at 3517.369 kb on - strand at 3517.507 kb on - strand, within Dsui_3280 at 3517.552 kb on + strand at 3517.557 kb on + strand at 3517.628 kb on + strand at 3517.628 kb on + strand at 3517.636 kb on - strand, within Dsui_3280 at 3517.691 kb on + strand, within Dsui_3280 at 3517.725 kb on - strand, within Dsui_3280 at 3517.729 kb on - strand, within Dsui_3280 at 3517.786 kb on + strand at 3517.910 kb on - strand, within Dsui_3280 at 3517.951 kb on - strand, within Dsui_3280 at 3517.951 kb on - strand, within Dsui_3280 at 3517.987 kb on + strand, within Dsui_3280 at 3517.987 kb on - strand, within Dsui_3280 at 3518.079 kb on - strand at 3518.107 kb on - strand at 3518.137 kb on - strand at 3518.137 kb on - strand at 3518.154 kb on + strand, within Dsui_3281 at 3518.171 kb on + strand at 3518.179 kb on - strand, within Dsui_3281 at 3518.179 kb on - strand, within Dsui_3281 at 3518.181 kb on + strand, within Dsui_3281 at 3518.183 kb on + strand at 3518.207 kb on - strand, within Dsui_3281 at 3518.249 kb on - strand, within Dsui_3281 at 3518.292 kb on + strand at 3518.416 kb on - strand, within Dsui_3281 at 3518.438 kb on - strand, within Dsui_3281 at 3518.478 kb on - strand, within Dsui_3281 at 3518.478 kb on - strand, within Dsui_3281 at 3518.501 kb on - strand, within Dsui_3281 at 3518.516 kb on - strand, within Dsui_3281 at 3518.616 kb on + strand, within Dsui_3281 at 3518.624 kb on - strand, within Dsui_3281 at 3518.626 kb on + strand at 3518.699 kb on - strand, within Dsui_3281 at 3518.700 kb on + strand, within Dsui_3281 at 3518.708 kb on - strand, within Dsui_3281 at 3518.731 kb on + strand at 3518.731 kb on + strand at 3518.731 kb on + strand at 3518.739 kb on - strand, within Dsui_3281 at 3518.766 kb on + strand, within Dsui_3281 at 3518.879 kb on - strand at 3518.961 kb on + strand at 3518.999 kb on - strand at 3519.042 kb on + strand at 3519.048 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 3,516,453 + +0.5 3,516,461 - -2.2 3,516,472 - -1.8 3,516,516 + -0.5 3,516,538 - Dsui_3279 0.15 -1.6 3,516,656 + -0.5 3,516,671 + -0.5 3,516,679 - Dsui_3279 0.29 -1.0 3,516,773 + +0.5 3,516,781 - Dsui_3279 0.40 -1.8 3,517,064 - Dsui_3279 0.70 -1.1 3,517,075 - Dsui_3279 0.71 -1.0 3,517,090 - Dsui_3279 0.72 -0.8 3,517,122 + +0.5 3,517,130 - Dsui_3279 0.77 -0.9 3,517,130 - Dsui_3279 0.77 -1.1 3,517,206 + +0.5 3,517,238 - Dsui_3279 0.88 -2.0 3,517,267 - -1.7 3,517,286 + +0.5 3,517,361 + +0.5 3,517,361 + -1.5 3,517,369 + +0.5 3,517,369 - -1.2 3,517,507 - Dsui_3280 0.10 -0.3 3,517,552 + +0.5 3,517,557 + +0.5 3,517,628 + -0.5 3,517,628 + -1.1 3,517,636 - Dsui_3280 0.31 -1.2 3,517,691 + Dsui_3280 0.40 -1.5 3,517,725 - Dsui_3280 0.46 -1.3 3,517,729 - Dsui_3280 0.46 -1.0 3,517,786 + +0.5 3,517,910 - Dsui_3280 0.75 -1.4 3,517,951 - Dsui_3280 0.82 -0.9 3,517,951 - Dsui_3280 0.82 -1.6 3,517,987 + Dsui_3280 0.88 -0.5 3,517,987 - Dsui_3280 0.88 -1.1 3,518,079 - -0.7 3,518,107 - -1.0 3,518,137 - -0.6 3,518,137 - -1.2 3,518,154 + Dsui_3281 0.11 -0.5 3,518,171 + +0.5 3,518,179 - Dsui_3281 0.13 -1.0 3,518,179 - Dsui_3281 0.13 -1.0 3,518,181 + Dsui_3281 0.14 -0.5 3,518,183 + +0.5 3,518,207 - Dsui_3281 0.17 -1.3 3,518,249 - Dsui_3281 0.21 -1.2 3,518,292 + -0.5 3,518,416 - Dsui_3281 0.40 -1.1 3,518,438 - Dsui_3281 0.43 -1.3 3,518,478 - Dsui_3281 0.47 -0.7 3,518,478 - Dsui_3281 0.47 -0.6 3,518,501 - Dsui_3281 0.50 -0.8 3,518,516 - Dsui_3281 0.51 +0.1 3,518,616 + Dsui_3281 0.63 -0.5 3,518,624 - Dsui_3281 0.63 -1.0 3,518,626 + +0.5 3,518,699 - Dsui_3281 0.72 -1.5 3,518,700 + Dsui_3281 0.72 -0.5 3,518,708 - Dsui_3281 0.73 -2.1 3,518,731 + -1.1 3,518,731 + -0.5 3,518,731 + +0.5 3,518,739 - Dsui_3281 0.76 -0.6 3,518,766 + Dsui_3281 0.79 -1.5 3,518,879 - -1.5 3,518,961 + -1.8 3,518,999 - -0.8 3,519,042 + -1.5 3,519,048 - -1.0
Or see this region's nucleotide sequence