Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3267 and Dsui_3268 are separated by 397 nucleotides Dsui_3268 and Dsui_3269 are separated by 103 nucleotides Dsui_3269 and Dsui_3270 are separated by 71 nucleotides
Dsui_3267: Dsui_3267 - biopolymer transport protein, at 3,505,809 to 3,506,414
_3267
Dsui_3268: Dsui_3268 - exodeoxyribonuclease VII, large subunit, at 3,506,812 to 3,508,212
_3268
Dsui_3269: Dsui_3269 - superoxide dismutase, at 3,508,316 to 3,508,903
_3269
Dsui_3270: Dsui_3270 - 2'-5' RNA ligase, at 3,508,975 to 3,509,652
_3270
Position (kb)
3506
3507
3508
3509 Strain fitness (log2 ratio)
-2
-1
0
1 at 3506.576 kb on + strand at 3506.576 kb on + strand at 3506.661 kb on - strand at 3506.704 kb on - strand at 3506.769 kb on + strand at 3506.777 kb on - strand at 3506.777 kb on - strand at 3506.777 kb on - strand at 3506.778 kb on - strand at 3506.817 kb on + strand at 3506.817 kb on + strand at 3506.817 kb on + strand at 3506.817 kb on + strand at 3506.825 kb on - strand at 3506.957 kb on - strand at 3507.028 kb on + strand, within Dsui_3268 at 3507.068 kb on - strand at 3507.126 kb on - strand at 3507.237 kb on + strand, within Dsui_3268 at 3507.383 kb on + strand, within Dsui_3268 at 3507.387 kb on + strand, within Dsui_3268 at 3507.462 kb on - strand at 3507.521 kb on + strand at 3507.728 kb on - strand at 3507.826 kb on - strand, within Dsui_3268 at 3507.826 kb on - strand, within Dsui_3268 at 3507.854 kb on + strand, within Dsui_3268 at 3507.963 kb on + strand, within Dsui_3268 at 3508.263 kb on + strand at 3508.271 kb on - strand at 3508.271 kb on - strand at 3508.271 kb on - strand at 3508.271 kb on - strand at 3508.275 kb on + strand at 3508.994 kb on + strand at 3508.999 kb on + strand at 3509.001 kb on - strand at 3509.002 kb on - strand at 3509.106 kb on - strand at 3509.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 3,506,576 + +0.4 3,506,576 + -0.6 3,506,661 - +0.4 3,506,704 - +0.4 3,506,769 + -0.6 3,506,777 - -0.6 3,506,777 - +0.4 3,506,777 - -2.2 3,506,778 - -1.2 3,506,817 + -2.6 3,506,817 + -0.6 3,506,817 + +0.0 3,506,817 + -1.3 3,506,825 - -0.6 3,506,957 - -0.6 3,507,028 + Dsui_3268 0.15 -0.7 3,507,068 - -1.6 3,507,126 - -0.6 3,507,237 + Dsui_3268 0.30 -1.5 3,507,383 + Dsui_3268 0.41 -1.7 3,507,387 + Dsui_3268 0.41 -0.8 3,507,462 - +0.4 3,507,521 + -1.9 3,507,728 - +0.4 3,507,826 - Dsui_3268 0.72 -1.9 3,507,826 - Dsui_3268 0.72 -2.2 3,507,854 + Dsui_3268 0.74 -1.4 3,507,963 + Dsui_3268 0.82 +0.2 3,508,263 + +0.1 3,508,271 - -1.2 3,508,271 - -0.6 3,508,271 - -0.6 3,508,271 - +0.4 3,508,275 + -0.2 3,508,994 + -1.8 3,508,999 + -0.5 3,509,001 - +0.4 3,509,002 - -0.6 3,509,106 - +0.4 3,509,106 - +0.4
Or see this region's nucleotide sequence