Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3261 and Dsui_3262 are separated by 16 nucleotides Dsui_3262 and Dsui_3263 are separated by 148 nucleotides Dsui_3263 and Dsui_3264 are separated by 20 nucleotides Dsui_3264 and Dsui_3265 overlap by 50 nucleotides
Dsui_3261: Dsui_3261 - 6-phosphofructokinase, at 3,501,266 to 3,502,534
_3261
Dsui_3262: Dsui_3262 - adenylate kinase family protein, at 3,502,551 to 3,503,204
_3262
Dsui_3263: Dsui_3263 - 3-deoxy-D-manno-octulosonate cytidylyltransferase, at 3,503,353 to 3,504,132
_3263
Dsui_3264: Dsui_3264 - hypothetical protein, at 3,504,153 to 3,504,329
_3264
Dsui_3265: Dsui_3265 - tetraacyldisaccharide 4''-kinase, at 3,504,280 to 3,505,371
_3265
Position (kb)
3503
3504
3505 Strain fitness (log2 ratio)
-1
0
1 at 3502.363 kb on - strand, within Dsui_3261 at 3502.375 kb on + strand, within Dsui_3261 at 3502.483 kb on + strand at 3502.557 kb on - strand at 3503.242 kb on - strand at 3503.285 kb on - strand at 3503.285 kb on - strand at 3503.286 kb on - strand at 3503.300 kb on + strand at 3503.308 kb on - strand at 3503.308 kb on - strand at 3503.308 kb on - strand at 3503.331 kb on - strand at 3503.333 kb on - strand at 3503.333 kb on - strand at 3504.142 kb on - strand at 3504.167 kb on + strand at 3504.167 kb on + strand at 3504.175 kb on - strand, within Dsui_3264
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 3,502,363 - Dsui_3261 0.86 -0.2 3,502,375 + Dsui_3261 0.87 +0.4 3,502,483 + -1.2 3,502,557 - -0.3 3,503,242 - -1.6 3,503,285 - -0.1 3,503,285 - -0.3 3,503,286 - -0.1 3,503,300 + +0.4 3,503,308 - -0.1 3,503,308 - -0.2 3,503,308 - -0.2 3,503,331 - -0.1 3,503,333 - -0.3 3,503,333 - -0.2 3,504,142 - -0.0 3,504,167 + -1.2 3,504,167 + +0.4 3,504,175 - Dsui_3264 0.12 -0.1
Or see this region's nucleotide sequence