Strain Fitness in Dechlorosoma suillum PS around Dsui_3260

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3258 and Dsui_3259 are separated by 138 nucleotidesDsui_3259 and Dsui_3260 are separated by 65 nucleotidesDsui_3260 and Dsui_3261 are separated by 116 nucleotides Dsui_3258: Dsui_3258 - mannose-6-phosphate isomerase, at 3,497,713 to 3,498,105 _3258 Dsui_3259: Dsui_3259 - dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein, at 3,498,244 to 3,499,014 _3259 Dsui_3260: Dsui_3260 - vacuolar-type H(+)-translocating pyrophosphatase, at 3,499,080 to 3,501,149 _3260 Dsui_3261: Dsui_3261 - 6-phosphofructokinase, at 3,501,266 to 3,502,534 _3261 Position (kb) 3499 3500 3501 3502Strain fitness (log2 ratio) -3 -2 -1 0 1at 3498.106 kb on - strandat 3498.145 kb on + strandat 3498.247 kb on + strandat 3498.332 kb on + strand, within Dsui_3259at 3498.517 kb on + strand, within Dsui_3259at 3498.522 kb on - strandat 3498.552 kb on - strandat 3498.696 kb on - strand, within Dsui_3259at 3498.744 kb on + strand, within Dsui_3259at 3498.764 kb on + strand, within Dsui_3259at 3498.770 kb on + strand, within Dsui_3259at 3498.770 kb on + strand, within Dsui_3259at 3498.778 kb on - strandat 3498.920 kb on + strand, within Dsui_3259at 3498.940 kb on + strandat 3498.941 kb on - strandat 3499.077 kb on + strandat 3499.078 kb on + strandat 3499.168 kb on - strandat 3499.205 kb on + strandat 3499.306 kb on + strandat 3499.355 kb on - strand, within Dsui_3260at 3499.363 kb on + strandat 3499.531 kb on - strand, within Dsui_3260at 3499.588 kb on + strand, within Dsui_3260at 3499.663 kb on - strand, within Dsui_3260at 3499.702 kb on - strand, within Dsui_3260at 3499.734 kb on - strand, within Dsui_3260at 3499.752 kb on - strand, within Dsui_3260at 3499.778 kb on + strandat 3499.814 kb on + strandat 3499.847 kb on + strandat 3499.889 kb on + strand, within Dsui_3260at 3499.993 kb on + strandat 3500.070 kb on + strand, within Dsui_3260at 3500.078 kb on - strand, within Dsui_3260at 3500.125 kb on - strand, within Dsui_3260at 3500.125 kb on - strand, within Dsui_3260at 3500.125 kb on - strand, within Dsui_3260at 3500.196 kb on - strand, within Dsui_3260at 3500.446 kb on + strand, within Dsui_3260at 3500.471 kb on - strand, within Dsui_3260at 3500.660 kb on - strand, within Dsui_3260at 3500.701 kb on - strand, within Dsui_3260at 3500.749 kb on - strand, within Dsui_3260at 3500.793 kb on + strand, within Dsui_3260at 3500.793 kb on + strandat 3500.796 kb on - strand, within Dsui_3260at 3500.804 kb on + strand, within Dsui_3260at 3500.881 kb on + strand, within Dsui_3260at 3500.965 kb on - strandat 3501.000 kb on - strandat 3501.002 kb on - strandat 3501.118 kb on - strandat 3501.123 kb on - strandat 3501.128 kb on - strandat 3501.155 kb on - strandat 3501.165 kb on - strandat 3501.174 kb on + strandat 3501.174 kb on + strandat 3501.182 kb on - strandat 3501.183 kb on - strandat 3501.263 kb on + strandat 3501.271 kb on - strandat 3501.279 kb on + strandat 3501.361 kb on - strandat 3501.368 kb on - strandat 3501.472 kb on - strand, within Dsui_3261at 3501.546 kb on + strand, within Dsui_3261at 3501.546 kb on + strand, within Dsui_3261at 3501.567 kb on + strand, within Dsui_3261at 3501.575 kb on - strand, within Dsui_3261at 3501.579 kb on + strand, within Dsui_3261at 3501.585 kb on - strand, within Dsui_3261at 3501.587 kb on - strand, within Dsui_3261at 3501.602 kb on - strand, within Dsui_3261at 3501.656 kb on - strand, within Dsui_3261at 3501.776 kb on + strand, within Dsui_3261at 3501.777 kb on - strand, within Dsui_3261at 3501.808 kb on + strandat 3501.830 kb on - strand, within Dsui_3261at 3502.015 kb on + strand, within Dsui_3261at 3502.016 kb on + strand, within Dsui_3261

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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3,498,106 - -1.4
3,498,145 + -0.6
3,498,247 + -0.6
3,498,332 + Dsui_3259 0.11 -0.6
3,498,517 + Dsui_3259 0.35 -0.6
3,498,522 - +0.4
3,498,552 - -0.6
3,498,696 - Dsui_3259 0.59 +0.4
3,498,744 + Dsui_3259 0.65 -2.4
3,498,764 + Dsui_3259 0.67 +0.4
3,498,770 + Dsui_3259 0.68 -0.6
3,498,770 + Dsui_3259 0.68 +0.4
3,498,778 - +0.4
3,498,920 + Dsui_3259 0.88 +0.4
3,498,940 + +0.4
3,498,941 - +0.4
3,499,077 + -0.6
3,499,078 + +0.4
3,499,168 - -1.9
3,499,205 + -0.6
3,499,306 + -0.6
3,499,355 - Dsui_3260 0.13 -0.6
3,499,363 + +0.4
3,499,531 - Dsui_3260 0.22 -1.2
3,499,588 + Dsui_3260 0.25 +0.4
3,499,663 - Dsui_3260 0.28 -0.6
3,499,702 - Dsui_3260 0.30 -1.7
3,499,734 - Dsui_3260 0.32 -0.6
3,499,752 - Dsui_3260 0.32 -1.2
3,499,778 + +0.4
3,499,814 + -0.6
3,499,847 + +0.4
3,499,889 + Dsui_3260 0.39 -0.6
3,499,993 + +0.4
3,500,070 + Dsui_3260 0.48 +0.4
3,500,078 - Dsui_3260 0.48 -0.4
3,500,125 - Dsui_3260 0.50 -3.4
3,500,125 - Dsui_3260 0.50 -1.8
3,500,125 - Dsui_3260 0.50 -0.6
3,500,196 - Dsui_3260 0.54 -1.2
3,500,446 + Dsui_3260 0.66 -1.2
3,500,471 - Dsui_3260 0.67 -1.0
3,500,660 - Dsui_3260 0.76 -0.4
3,500,701 - Dsui_3260 0.78 -1.7
3,500,749 - Dsui_3260 0.81 -0.4
3,500,793 + Dsui_3260 0.83 +0.4
3,500,793 + +0.4
3,500,796 - Dsui_3260 0.83 -0.4
3,500,804 + Dsui_3260 0.83 -1.2
3,500,881 + Dsui_3260 0.87 -2.4
3,500,965 - -0.2
3,501,000 - -0.2
3,501,002 - +0.2
3,501,118 - -0.1
3,501,123 - +0.2
3,501,128 - -0.1
3,501,155 - -0.2
3,501,165 - -0.1
3,501,174 + -0.6
3,501,174 + -1.9
3,501,182 - +0.0
3,501,183 - +0.1
3,501,263 + +0.4
3,501,271 - -0.5
3,501,279 + -1.6
3,501,361 - -0.1
3,501,368 - -0.3
3,501,472 - Dsui_3261 0.16 -0.0
3,501,546 + Dsui_3261 0.22 +0.4
3,501,546 + Dsui_3261 0.22 -0.6
3,501,567 + Dsui_3261 0.24 -0.6
3,501,575 - Dsui_3261 0.24 -0.4
3,501,579 + Dsui_3261 0.25 -1.2
3,501,585 - Dsui_3261 0.25 -0.3
3,501,587 - Dsui_3261 0.25 -0.3
3,501,602 - Dsui_3261 0.26 -0.0
3,501,656 - Dsui_3261 0.31 -0.3
3,501,776 + Dsui_3261 0.40 +0.4
3,501,777 - Dsui_3261 0.40 -0.1
3,501,808 + +0.4
3,501,830 - Dsui_3261 0.44 +0.1
3,502,015 + Dsui_3261 0.59 -2.2
3,502,016 + Dsui_3261 0.59 -0.6

Or see this region's nucleotide sequence