Strain Fitness in Dechlorosoma suillum PS around Dsui_3180

Experiment: ALP with Zinc 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3179 and Dsui_3180 overlap by 1 nucleotidesDsui_3180 and Dsui_3181 are separated by 182 nucleotides Dsui_3179: Dsui_3179 - signal transduction histidine kinase, at 3,410,128 to 3,411,192 _3179 Dsui_3180: Dsui_3180 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 3,411,192 to 3,411,902 _3180 Dsui_3181: Dsui_3181 - RND family efflux transporter, MFP subunit, at 3,412,085 to 3,413,245 _3181 Position (kb) 3411 3412Strain fitness (log2 ratio) -2 -1 0 1at 3410.219 kb on - strandat 3410.232 kb on + strandat 3410.425 kb on - strandat 3410.485 kb on - strand, within Dsui_3179at 3410.504 kb on - strand, within Dsui_3179at 3410.590 kb on - strand, within Dsui_3179at 3410.703 kb on + strandat 3410.751 kb on + strandat 3410.759 kb on - strand, within Dsui_3179at 3410.999 kb on - strand, within Dsui_3179at 3411.132 kb on + strandat 3411.211 kb on - strandat 3411.268 kb on - strand, within Dsui_3180at 3411.419 kb on - strand, within Dsui_3180at 3411.490 kb on + strandat 3411.553 kb on - strand, within Dsui_3180at 3411.610 kb on + strand, within Dsui_3180at 3411.633 kb on + strand, within Dsui_3180at 3411.749 kb on + strandat 3411.773 kb on + strand, within Dsui_3180at 3411.781 kb on - strand, within Dsui_3180at 3412.035 kb on - strandat 3412.038 kb on + strandat 3412.045 kb on - strandat 3412.050 kb on - strandat 3412.163 kb on + strandat 3412.260 kb on - strandat 3412.324 kb on + strandat 3412.356 kb on - strandat 3412.406 kb on + strandat 3412.466 kb on - strandat 3412.550 kb on - strandat 3412.560 kb on - strandat 3412.570 kb on - strandat 3412.669 kb on - strandat 3412.825 kb on + strandat 3412.833 kb on - strand, within Dsui_3181

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
remove
3,410,219 - -1.6
3,410,232 + +0.4
3,410,425 - +0.4
3,410,485 - Dsui_3179 0.34 -2.4
3,410,504 - Dsui_3179 0.35 -0.6
3,410,590 - Dsui_3179 0.43 -1.6
3,410,703 + +0.4
3,410,751 + +0.4
3,410,759 - Dsui_3179 0.59 -1.2
3,410,999 - Dsui_3179 0.82 -2.6
3,411,132 + +0.4
3,411,211 - +0.4
3,411,268 - Dsui_3180 0.11 -0.6
3,411,419 - Dsui_3180 0.32 +0.4
3,411,490 + +0.4
3,411,553 - Dsui_3180 0.51 -0.0
3,411,610 + Dsui_3180 0.59 +0.4
3,411,633 + Dsui_3180 0.62 -1.2
3,411,749 + +0.4
3,411,773 + Dsui_3180 0.82 -0.6
3,411,781 - Dsui_3180 0.83 -1.2
3,412,035 - +0.4
3,412,038 + -0.6
3,412,045 - +0.4
3,412,050 - -1.2
3,412,163 + -1.2
3,412,260 - +0.4
3,412,324 + +0.4
3,412,356 - +0.4
3,412,406 + +0.4
3,412,466 - +0.4
3,412,550 - +0.4
3,412,560 - +0.4
3,412,570 - -1.6
3,412,669 - +0.4
3,412,825 + +0.4
3,412,833 - Dsui_3181 0.64 -0.3

Or see this region's nucleotide sequence