Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3153 and Dsui_3154 are separated by 1 nucleotides Dsui_3154 and Dsui_3155 are separated by 72 nucleotides Dsui_3155 and Dsui_3156 are separated by 176 nucleotides
Dsui_3153: Dsui_3153 - TRAP transporter, DctM subunit, at 3,375,267 to 3,376,550
_3153
Dsui_3154: Dsui_3154 - TRAP-type C4-dicarboxylate transport system, small permease component, at 3,376,552 to 3,377,292
_3154
Dsui_3155: Dsui_3155 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 3,377,365 to 3,378,363
_3155
Dsui_3156: Dsui_3156 - putative permease, at 3,378,540 to 3,379,313
_3156
Position (kb)
3377
3378
3379 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3376.412 kb on + strand, within Dsui_3153 at 3376.461 kb on + strand at 3376.516 kb on + strand at 3376.597 kb on + strand at 3376.800 kb on + strand, within Dsui_3154 at 3377.061 kb on + strand, within Dsui_3154 at 3377.084 kb on - strand, within Dsui_3154 at 3377.129 kb on + strand, within Dsui_3154 at 3377.135 kb on - strand, within Dsui_3154 at 3377.208 kb on - strand, within Dsui_3154 at 3377.240 kb on + strand at 3377.242 kb on - strand at 3377.248 kb on - strand at 3377.251 kb on + strand at 3377.302 kb on + strand at 3377.305 kb on - strand at 3377.310 kb on - strand at 3377.329 kb on - strand at 3377.331 kb on + strand at 3377.404 kb on + strand at 3377.450 kb on - strand at 3377.468 kb on - strand, within Dsui_3155 at 3377.499 kb on + strand, within Dsui_3155 at 3377.542 kb on + strand, within Dsui_3155 at 3377.542 kb on + strand, within Dsui_3155 at 3377.774 kb on + strand, within Dsui_3155 at 3377.782 kb on - strand, within Dsui_3155 at 3377.792 kb on - strand, within Dsui_3155 at 3378.002 kb on + strand, within Dsui_3155 at 3378.038 kb on + strand, within Dsui_3155 at 3378.080 kb on + strand, within Dsui_3155 at 3378.080 kb on - strand, within Dsui_3155 at 3378.119 kb on + strand, within Dsui_3155 at 3378.126 kb on + strand, within Dsui_3155 at 3378.178 kb on + strand at 3378.392 kb on + strand at 3378.417 kb on - strand at 3378.417 kb on - strand at 3378.427 kb on - strand at 3378.806 kb on - strand, within Dsui_3156 at 3378.892 kb on + strand, within Dsui_3156 at 3378.927 kb on - strand, within Dsui_3156 at 3378.946 kb on + strand, within Dsui_3156 at 3379.059 kb on + strand, within Dsui_3156 at 3379.065 kb on - strand, within Dsui_3156 at 3379.162 kb on + strand, within Dsui_3156 at 3379.170 kb on - strand at 3379.173 kb on - strand, within Dsui_3156 at 3379.186 kb on + strand, within Dsui_3156 at 3379.270 kb on - strand at 3379.293 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 3,376,412 + Dsui_3153 0.89 -0.6 3,376,461 + +0.4 3,376,516 + +0.4 3,376,597 + -2.2 3,376,800 + Dsui_3154 0.33 +0.4 3,377,061 + Dsui_3154 0.69 +0.4 3,377,084 - Dsui_3154 0.72 -0.3 3,377,129 + Dsui_3154 0.78 +0.4 3,377,135 - Dsui_3154 0.79 -0.8 3,377,208 - Dsui_3154 0.89 -0.5 3,377,240 + -2.0 3,377,242 - -0.4 3,377,248 - -0.5 3,377,251 + -0.6 3,377,302 + -2.0 3,377,305 - -0.5 3,377,310 - +0.7 3,377,329 - -0.2 3,377,331 + -2.0 3,377,404 + +0.4 3,377,450 - +0.1 3,377,468 - Dsui_3155 0.10 +0.2 3,377,499 + Dsui_3155 0.13 +0.4 3,377,542 + Dsui_3155 0.18 -3.0 3,377,542 + Dsui_3155 0.18 +0.4 3,377,774 + Dsui_3155 0.41 +0.4 3,377,782 - Dsui_3155 0.42 +0.1 3,377,792 - Dsui_3155 0.43 +0.1 3,378,002 + Dsui_3155 0.64 -0.6 3,378,038 + Dsui_3155 0.67 +0.4 3,378,080 + Dsui_3155 0.72 -0.6 3,378,080 - Dsui_3155 0.72 +0.4 3,378,119 + Dsui_3155 0.75 +0.4 3,378,126 + Dsui_3155 0.76 -0.6 3,378,178 + +0.4 3,378,392 + +0.4 3,378,417 - -0.1 3,378,417 - +0.1 3,378,427 - -0.0 3,378,806 - Dsui_3156 0.34 -1.2 3,378,892 + Dsui_3156 0.45 -2.0 3,378,927 - Dsui_3156 0.50 -0.6 3,378,946 + Dsui_3156 0.52 +0.4 3,379,059 + Dsui_3156 0.67 -1.2 3,379,065 - Dsui_3156 0.68 -0.6 3,379,162 + Dsui_3156 0.80 +0.4 3,379,170 - +0.4 3,379,173 - Dsui_3156 0.82 -1.2 3,379,186 + Dsui_3156 0.83 -1.6 3,379,270 - +0.4 3,379,293 + -2.2
Or see this region's nucleotide sequence