Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3065 and Dsui_3066 are separated by 247 nucleotides Dsui_3066 and Dsui_3067 are separated by 3 nucleotides Dsui_3067 and Dsui_3068 are separated by 94 nucleotides
Dsui_3065: Dsui_3065 - carbamoyl-phosphate synthase, small subunit, at 3,281,423 to 3,282,571
_3065
Dsui_3066: Dsui_3066 - dihydrodipicolinate reductase, at 3,282,819 to 3,283,625
_3066
Dsui_3067: Dsui_3067 - small protein A (tmRNA-binding), at 3,283,629 to 3,284,159
_3067
Dsui_3068: Dsui_3068 - Fe2+/Zn2+ uptake regulation protein, at 3,284,254 to 3,284,724
_3068
Position (kb)
3282
3283
3284 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3282.740 kb on - strand at 3282.783 kb on + strand at 3282.783 kb on + strand at 3283.056 kb on + strand, within Dsui_3066 at 3283.056 kb on + strand, within Dsui_3066 at 3283.099 kb on - strand, within Dsui_3066 at 3283.119 kb on - strand, within Dsui_3066 at 3283.252 kb on - strand, within Dsui_3066 at 3283.421 kb on + strand at 3283.429 kb on - strand, within Dsui_3066 at 3283.429 kb on - strand, within Dsui_3066 at 3283.459 kb on + strand at 3283.467 kb on - strand, within Dsui_3066 at 3283.467 kb on - strand, within Dsui_3066 at 3283.467 kb on - strand, within Dsui_3066 at 3283.467 kb on - strand, within Dsui_3066 at 3283.550 kb on + strand at 3283.550 kb on + strand at 3283.580 kb on - strand at 3283.647 kb on - strand at 3283.697 kb on - strand, within Dsui_3067 at 3283.725 kb on - strand, within Dsui_3067 at 3284.245 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 3,282,740 - +0.3 3,282,783 + -0.6 3,282,783 + +0.4 3,283,056 + Dsui_3066 0.29 -1.2 3,283,056 + Dsui_3066 0.29 -0.6 3,283,099 - Dsui_3066 0.35 +0.1 3,283,119 - Dsui_3066 0.37 -0.1 3,283,252 - Dsui_3066 0.54 +0.1 3,283,421 + +0.4 3,283,429 - Dsui_3066 0.76 -0.1 3,283,429 - Dsui_3066 0.76 -0.0 3,283,459 + +0.4 3,283,467 - Dsui_3066 0.80 +0.4 3,283,467 - Dsui_3066 0.80 +0.7 3,283,467 - Dsui_3066 0.80 -0.3 3,283,467 - Dsui_3066 0.80 +0.2 3,283,550 + -2.6 3,283,550 + -1.6 3,283,580 - +0.2 3,283,647 - -0.2 3,283,697 - Dsui_3067 0.13 -0.3 3,283,725 - Dsui_3067 0.18 -0.1 3,284,245 + -3.0
Or see this region's nucleotide sequence