Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2998 and Dsui_2999 are separated by 4 nucleotides Dsui_2999 and Dsui_3000 are separated by 9 nucleotides
Dsui_2998: Dsui_2998 - ABC-type phosphate/phosphonate transport system, periplasmic component, at 3,207,936 to 3,208,802
_2998
Dsui_2999: Dsui_2999 - histidine kinase,HAMP domain-containing protein,histidine kinase, at 3,208,807 to 3,210,237
_2999
Dsui_3000: Dsui_3000 - putative domain HDIG-containing protein, at 3,210,247 to 3,211,278
_3000
Position (kb)
3208
3209
3210
3211 Strain fitness (log2 ratio)
-2
-1
0
1 at 3207.968 kb on + strand at 3207.978 kb on + strand at 3208.055 kb on + strand, within Dsui_2998 at 3208.055 kb on + strand, within Dsui_2998 at 3208.055 kb on + strand, within Dsui_2998 at 3208.063 kb on - strand at 3208.063 kb on - strand at 3208.199 kb on + strand, within Dsui_2998 at 3208.248 kb on - strand at 3208.329 kb on + strand, within Dsui_2998 at 3208.393 kb on + strand, within Dsui_2998 at 3208.414 kb on - strand at 3208.492 kb on + strand, within Dsui_2998 at 3208.500 kb on - strand at 3208.575 kb on + strand, within Dsui_2998 at 3208.612 kb on - strand, within Dsui_2998 at 3208.657 kb on + strand, within Dsui_2998 at 3208.662 kb on + strand, within Dsui_2998 at 3208.670 kb on - strand at 3208.840 kb on + strand at 3208.845 kb on + strand at 3208.845 kb on + strand at 3209.034 kb on + strand, within Dsui_2999 at 3209.051 kb on - strand, within Dsui_2999 at 3209.087 kb on - strand, within Dsui_2999 at 3209.213 kb on - strand, within Dsui_2999 at 3209.447 kb on - strand at 3209.447 kb on - strand at 3209.457 kb on - strand, within Dsui_2999 at 3209.528 kb on + strand, within Dsui_2999 at 3209.677 kb on + strand, within Dsui_2999 at 3209.685 kb on - strand at 3209.712 kb on + strand, within Dsui_2999 at 3209.800 kb on - strand at 3209.909 kb on + strand, within Dsui_2999 at 3209.919 kb on + strand, within Dsui_2999 at 3210.096 kb on + strand at 3210.123 kb on - strand at 3210.123 kb on - strand at 3210.123 kb on - strand at 3210.123 kb on - strand at 3210.127 kb on + strand at 3210.156 kb on + strand at 3210.193 kb on + strand at 3210.202 kb on - strand at 3210.252 kb on + strand at 3210.252 kb on + strand at 3210.254 kb on + strand at 3210.254 kb on + strand at 3210.262 kb on - strand at 3210.267 kb on - strand at 3210.269 kb on + strand at 3210.292 kb on + strand at 3210.300 kb on - strand at 3210.301 kb on - strand at 3210.529 kb on + strand, within Dsui_3000 at 3210.648 kb on - strand, within Dsui_3000 at 3210.718 kb on + strand, within Dsui_3000 at 3210.726 kb on - strand, within Dsui_3000 at 3210.755 kb on - strand, within Dsui_3000 at 3210.755 kb on - strand, within Dsui_3000 at 3210.782 kb on - strand, within Dsui_3000 at 3210.976 kb on + strand, within Dsui_3000 at 3210.977 kb on - strand, within Dsui_3000 at 3211.027 kb on + strand, within Dsui_3000 at 3211.114 kb on + strand, within Dsui_3000 at 3211.154 kb on + strand, within Dsui_3000 at 3211.213 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 3,207,968 + -1.5 3,207,978 + -0.6 3,208,055 + Dsui_2998 0.14 -1.2 3,208,055 + Dsui_2998 0.14 -0.6 3,208,055 + Dsui_2998 0.14 -0.6 3,208,063 - -1.2 3,208,063 - +0.4 3,208,199 + Dsui_2998 0.30 +0.4 3,208,248 - -0.6 3,208,329 + Dsui_2998 0.45 +0.4 3,208,393 + Dsui_2998 0.53 -1.2 3,208,414 - +0.4 3,208,492 + Dsui_2998 0.64 +0.4 3,208,500 - +0.4 3,208,575 + Dsui_2998 0.74 -1.9 3,208,612 - Dsui_2998 0.78 +0.4 3,208,657 + Dsui_2998 0.83 +0.4 3,208,662 + Dsui_2998 0.84 -0.6 3,208,670 - +0.4 3,208,840 + +0.4 3,208,845 + -1.6 3,208,845 + -2.2 3,209,034 + Dsui_2999 0.16 +0.4 3,209,051 - Dsui_2999 0.17 +0.4 3,209,087 - Dsui_2999 0.20 +0.4 3,209,213 - Dsui_2999 0.28 +0.4 3,209,447 - -0.6 3,209,447 - +0.4 3,209,457 - Dsui_2999 0.45 +0.4 3,209,528 + Dsui_2999 0.50 +0.4 3,209,677 + Dsui_2999 0.61 -1.6 3,209,685 - +0.4 3,209,712 + Dsui_2999 0.63 -0.6 3,209,800 - -1.2 3,209,909 + Dsui_2999 0.77 +0.4 3,209,919 + Dsui_2999 0.78 -0.6 3,210,096 + -2.4 3,210,123 - +0.4 3,210,123 - +0.4 3,210,123 - -1.6 3,210,123 - -0.6 3,210,127 + +0.4 3,210,156 + -1.2 3,210,193 + -1.9 3,210,202 - -1.2 3,210,252 + -0.3 3,210,252 + +0.0 3,210,254 + -0.4 3,210,254 + -0.3 3,210,262 - -1.9 3,210,267 - +0.4 3,210,269 + +0.1 3,210,292 + -0.5 3,210,300 - -0.6 3,210,301 - -1.6 3,210,529 + Dsui_3000 0.27 -0.8 3,210,648 - Dsui_3000 0.39 -1.2 3,210,718 + Dsui_3000 0.46 -0.7 3,210,726 - Dsui_3000 0.46 -1.2 3,210,755 - Dsui_3000 0.49 -1.9 3,210,755 - Dsui_3000 0.49 +0.4 3,210,782 - Dsui_3000 0.52 +0.4 3,210,976 + Dsui_3000 0.71 -0.5 3,210,977 - Dsui_3000 0.71 -0.6 3,211,027 + Dsui_3000 0.76 -0.2 3,211,114 + Dsui_3000 0.84 -0.6 3,211,154 + Dsui_3000 0.88 -0.3 3,211,213 + -0.3
Or see this region's nucleotide sequence