Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2970 and Dsui_2971 overlap by 4 nucleotides Dsui_2971 and Dsui_2972 are separated by 106 nucleotides Dsui_2972 and Dsui_2973 are separated by 5 nucleotides Dsui_2973 and Dsui_2974 are separated by 4 nucleotides
Dsui_2970: Dsui_2970 - putative Fe-S oxidoreductase, at 3,176,380 to 3,176,670
_2970
Dsui_2971: Dsui_2971 - putative esterase of the alpha-beta hydrolase superfamily, at 3,176,667 to 3,177,560
_2971
Dsui_2972: Dsui_2972 - leucyl/phenylalanyl-tRNA--protein transferase, at 3,177,667 to 3,178,383
_2972
Dsui_2973: Dsui_2973 - putative arginyl-tRNA:protein arginylyltransferase, at 3,178,389 to 3,179,162
_2973
Dsui_2974: Dsui_2974 - putative iron-regulated membrane protein, at 3,179,167 to 3,180,438
_2974
Position (kb)
3177
3178
3179 Strain fitness (log2 ratio)
-2
-1
0
1 at 3176.850 kb on + strand, within Dsui_2971 at 3176.858 kb on - strand, within Dsui_2971 at 3176.863 kb on + strand, within Dsui_2971 at 3176.935 kb on + strand at 3176.943 kb on - strand, within Dsui_2971 at 3177.060 kb on - strand, within Dsui_2971 at 3177.128 kb on + strand at 3177.198 kb on - strand, within Dsui_2971 at 3177.245 kb on + strand at 3177.245 kb on + strand, within Dsui_2971 at 3177.289 kb on + strand at 3177.403 kb on - strand, within Dsui_2971 at 3177.432 kb on - strand, within Dsui_2971 at 3177.632 kb on - strand at 3177.637 kb on - strand at 3177.643 kb on - strand at 3177.680 kb on - strand at 3177.834 kb on + strand, within Dsui_2972 at 3177.834 kb on - strand at 3177.839 kb on + strand, within Dsui_2972 at 3177.864 kb on - strand, within Dsui_2972 at 3177.922 kb on + strand, within Dsui_2972 at 3177.955 kb on - strand at 3178.163 kb on + strand, within Dsui_2972 at 3178.233 kb on + strand, within Dsui_2972 at 3178.241 kb on + strand, within Dsui_2972 at 3178.241 kb on + strand, within Dsui_2972 at 3178.441 kb on - strand at 3178.457 kb on - strand at 3178.486 kb on + strand, within Dsui_2973 at 3178.726 kb on + strand, within Dsui_2973 at 3178.936 kb on + strand, within Dsui_2973 at 3178.969 kb on + strand, within Dsui_2973 at 3179.151 kb on + strand at 3179.182 kb on + strand at 3179.237 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 3,176,850 + Dsui_2971 0.20 +0.4 3,176,858 - Dsui_2971 0.21 -0.4 3,176,863 + Dsui_2971 0.22 +0.4 3,176,935 + -0.6 3,176,943 - Dsui_2971 0.31 -0.8 3,177,060 - Dsui_2971 0.44 +0.0 3,177,128 + -0.6 3,177,198 - Dsui_2971 0.59 +0.1 3,177,245 + +0.4 3,177,245 + Dsui_2971 0.65 -2.1 3,177,289 + +0.4 3,177,403 - Dsui_2971 0.82 -2.1 3,177,432 - Dsui_2971 0.86 -2.4 3,177,632 - +0.5 3,177,637 - +0.5 3,177,643 - +0.5 3,177,680 - +0.5 3,177,834 + Dsui_2972 0.23 +1.0 3,177,834 - -0.5 3,177,839 + Dsui_2972 0.24 -1.1 3,177,864 - Dsui_2972 0.27 -1.5 3,177,922 + Dsui_2972 0.36 -2.4 3,177,955 - -0.5 3,178,163 + Dsui_2972 0.69 +0.0 3,178,233 + Dsui_2972 0.79 -0.2 3,178,241 + Dsui_2972 0.80 -0.3 3,178,241 + Dsui_2972 0.80 -1.8 3,178,441 - -0.5 3,178,457 - +0.5 3,178,486 + Dsui_2973 0.13 -0.6 3,178,726 + Dsui_2973 0.44 +0.2 3,178,936 + Dsui_2973 0.71 -0.8 3,178,969 + Dsui_2973 0.75 -0.0 3,179,151 + -0.2 3,179,182 + -0.8 3,179,237 - +0.5
Or see this region's nucleotide sequence