Strain Fitness in Dechlorosoma suillum PS around Dsui_2881

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2880 and Dsui_2881 overlap by 4 nucleotidesDsui_2881 and Dsui_2882 are separated by 10 nucleotidesDsui_2882 and Dsui_2883 overlap by 1 nucleotides Dsui_2880: Dsui_2880 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 3,075,737 to 3,077,080 _2880 Dsui_2881: Dsui_2881 - 8-amino-7-oxononanoate synthase, at 3,077,077 to 3,078,252 _2881 Dsui_2882: Dsui_2882 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 3,078,263 to 3,079,015 _2882 Dsui_2883: Dsui_2883 - biotin biosynthesis protein BioC, at 3,079,015 to 3,079,788 _2883 Position (kb) 3077 3078 3079Strain fitness (log2 ratio) -2 -1 0 1at 3076.112 kb on + strand, within Dsui_2880at 3076.205 kb on - strandat 3076.245 kb on - strand, within Dsui_2880at 3076.264 kb on - strandat 3076.264 kb on - strand, within Dsui_2880at 3076.429 kb on + strand, within Dsui_2880at 3076.455 kb on + strand, within Dsui_2880at 3076.620 kb on - strandat 3076.629 kb on + strand, within Dsui_2880at 3076.641 kb on + strand, within Dsui_2880at 3076.649 kb on - strandat 3076.810 kb on + strand, within Dsui_2880at 3076.831 kb on + strand, within Dsui_2880at 3076.907 kb on - strandat 3076.954 kb on - strandat 3077.009 kb on - strandat 3077.111 kb on - strandat 3077.219 kb on + strand, within Dsui_2881at 3077.227 kb on - strandat 3077.724 kb on - strand, within Dsui_2881at 3077.838 kb on - strand, within Dsui_2881at 3077.869 kb on - strand, within Dsui_2881at 3077.915 kb on + strand, within Dsui_2881at 3078.077 kb on + strand, within Dsui_2881at 3078.085 kb on - strandat 3078.159 kb on - strandat 3078.199 kb on - strandat 3078.228 kb on - strandat 3078.285 kb on + strandat 3078.293 kb on - strandat 3078.298 kb on - strandat 3078.408 kb on + strand, within Dsui_2882at 3078.505 kb on + strand, within Dsui_2882at 3078.513 kb on - strand, within Dsui_2882at 3078.524 kb on + strand, within Dsui_2882at 3078.586 kb on - strandat 3078.878 kb on - strand, within Dsui_2882at 3078.879 kb on - strandat 3078.983 kb on + strandat 3079.040 kb on + strandat 3079.069 kb on - strandat 3079.100 kb on - strand, within Dsui_2883at 3079.224 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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3,076,112 + Dsui_2880 0.28 -0.1
3,076,205 - +0.5
3,076,245 - Dsui_2880 0.38 +0.5
3,076,264 - +0.5
3,076,264 - Dsui_2880 0.39 -1.5
3,076,429 + Dsui_2880 0.51 -0.3
3,076,455 + Dsui_2880 0.53 -0.5
3,076,620 - -1.1
3,076,629 + Dsui_2880 0.66 -0.4
3,076,641 + Dsui_2880 0.67 -0.4
3,076,649 - -0.5
3,076,810 + Dsui_2880 0.80 -0.3
3,076,831 + Dsui_2880 0.81 -0.1
3,076,907 - -1.1
3,076,954 - +0.5
3,077,009 - -0.5
3,077,111 - +0.5
3,077,219 + Dsui_2881 0.12 -0.2
3,077,227 - +0.5
3,077,724 - Dsui_2881 0.55 -1.5
3,077,838 - Dsui_2881 0.65 -0.5
3,077,869 - Dsui_2881 0.67 -1.1
3,077,915 + Dsui_2881 0.71 -0.2
3,078,077 + Dsui_2881 0.85 -0.4
3,078,085 - +0.5
3,078,159 - -1.5
3,078,199 - -1.1
3,078,228 - +0.5
3,078,285 + +0.1
3,078,293 - -0.5
3,078,298 - -0.5
3,078,408 + Dsui_2882 0.19 -0.2
3,078,505 + Dsui_2882 0.32 -0.1
3,078,513 - Dsui_2882 0.33 -0.5
3,078,524 + Dsui_2882 0.35 -0.1
3,078,586 - +0.5
3,078,878 - Dsui_2882 0.82 -1.8
3,078,879 - -0.5
3,078,983 + -0.2
3,079,040 + -0.3
3,079,069 - -1.8
3,079,100 - Dsui_2883 0.11 -2.5
3,079,224 + +0.5

Or see this region's nucleotide sequence