Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2875 and Dsui_2876 are separated by 2 nucleotides Dsui_2876 and Dsui_2877 overlap by 1 nucleotides Dsui_2877 and Dsui_2878 overlap by 7 nucleotides
Dsui_2875: Dsui_2875 - outer membrane protein, at 3,068,996 to 3,070,471
_2875
Dsui_2876: Dsui_2876 - RND family efflux transporter, MFP subunit, at 3,070,474 to 3,071,730
_2876
Dsui_2877: Dsui_2877 - ABC-type antimicrobial peptide transport system, ATPase component, at 3,071,730 to 3,072,476
_2877
Dsui_2878: Dsui_2878 - ABC-type antimicrobial peptide transport system, permease component, at 3,072,470 to 3,073,690
_2878
Position (kb)
3070
3071
3072 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3069.482 kb on + strand, within Dsui_2875 at 3069.482 kb on + strand at 3069.487 kb on + strand, within Dsui_2875 at 3069.500 kb on - strand at 3069.500 kb on - strand at 3069.552 kb on + strand, within Dsui_2875 at 3069.621 kb on + strand, within Dsui_2875 at 3069.902 kb on + strand, within Dsui_2875 at 3070.056 kb on + strand, within Dsui_2875 at 3070.056 kb on + strand, within Dsui_2875 at 3070.356 kb on + strand at 3070.363 kb on - strand at 3070.375 kb on - strand at 3070.375 kb on - strand at 3070.488 kb on + strand at 3070.617 kb on + strand, within Dsui_2876 at 3070.680 kb on + strand, within Dsui_2876 at 3070.689 kb on - strand, within Dsui_2876 at 3070.772 kb on - strand at 3070.780 kb on + strand, within Dsui_2876 at 3070.780 kb on + strand, within Dsui_2876 at 3070.783 kb on + strand, within Dsui_2876 at 3070.820 kb on + strand, within Dsui_2876 at 3070.820 kb on + strand, within Dsui_2876 at 3070.851 kb on + strand, within Dsui_2876 at 3070.979 kb on - strand at 3071.069 kb on + strand, within Dsui_2876 at 3071.069 kb on + strand, within Dsui_2876 at 3071.120 kb on - strand, within Dsui_2876 at 3071.304 kb on + strand, within Dsui_2876 at 3071.385 kb on - strand at 3071.523 kb on + strand, within Dsui_2876 at 3071.800 kb on - strand at 3071.813 kb on - strand, within Dsui_2877 at 3071.921 kb on - strand at 3071.931 kb on - strand at 3072.069 kb on - strand at 3072.076 kb on - strand at 3072.148 kb on + strand, within Dsui_2877 at 3072.187 kb on - strand, within Dsui_2877 at 3072.246 kb on + strand, within Dsui_2877 at 3072.310 kb on - strand at 3072.358 kb on + strand, within Dsui_2877 at 3072.358 kb on + strand, within Dsui_2877 at 3072.599 kb on + strand, within Dsui_2878 at 3072.711 kb on + strand, within Dsui_2878
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 3,069,482 + Dsui_2875 0.33 -0.5 3,069,482 + +0.5 3,069,487 + Dsui_2875 0.33 -1.5 3,069,500 - +0.5 3,069,500 - +0.5 3,069,552 + Dsui_2875 0.38 -0.3 3,069,621 + Dsui_2875 0.42 -0.5 3,069,902 + Dsui_2875 0.61 -1.3 3,070,056 + Dsui_2875 0.72 -1.5 3,070,056 + Dsui_2875 0.72 -0.5 3,070,356 + -1.5 3,070,363 - +0.5 3,070,375 - +0.5 3,070,375 - +0.5 3,070,488 + -0.5 3,070,617 + Dsui_2876 0.11 -1.8 3,070,680 + Dsui_2876 0.16 -2.2 3,070,689 - Dsui_2876 0.17 +0.1 3,070,772 - -1.1 3,070,780 + Dsui_2876 0.24 -0.7 3,070,780 + Dsui_2876 0.24 +1.3 3,070,783 + Dsui_2876 0.25 -3.3 3,070,820 + Dsui_2876 0.28 -0.6 3,070,820 + Dsui_2876 0.28 -2.3 3,070,851 + Dsui_2876 0.30 +0.4 3,070,979 - -0.5 3,071,069 + Dsui_2876 0.47 -0.7 3,071,069 + Dsui_2876 0.47 -2.8 3,071,120 - Dsui_2876 0.51 -1.1 3,071,304 + Dsui_2876 0.66 -0.9 3,071,385 - +0.5 3,071,523 + Dsui_2876 0.83 -1.7 3,071,800 - +0.5 3,071,813 - Dsui_2877 0.11 -2.5 3,071,921 - -0.5 3,071,931 - +0.5 3,072,069 - -0.5 3,072,076 - +0.5 3,072,148 + Dsui_2877 0.56 -0.6 3,072,187 - Dsui_2877 0.61 +0.5 3,072,246 + Dsui_2877 0.69 -0.1 3,072,310 - -1.1 3,072,358 + Dsui_2877 0.84 -0.5 3,072,358 + Dsui_2877 0.84 +2.1 3,072,599 + Dsui_2878 0.11 -1.3 3,072,711 + Dsui_2878 0.20 -1.9
Or see this region's nucleotide sequence