Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2806 and Dsui_2807 are separated by 130 nucleotides Dsui_2807 and Dsui_2808 are separated by 71 nucleotides Dsui_2808 and Dsui_2809 are separated by 59 nucleotides Dsui_2809 and Dsui_2810 overlap by 4 nucleotides
Dsui_2806: Dsui_2806 - PAS domain S-box, at 2,977,521 to 2,980,562
_2806
Dsui_2807: Dsui_2807 - enoyl-CoA hydratase/carnithine racemase, at 2,980,693 to 2,981,481
_2807
Dsui_2808: Dsui_2808 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 2,981,553 to 2,983,211
_2808
Dsui_2809: Dsui_2809 - ABC-type uncharacterized transport system, auxiliary component, at 2,983,271 to 2,983,858
_2809
Dsui_2810: Dsui_2810 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 2,983,855 to 2,984,778
_2810
Position (kb)
2981
2982
2983
2984 Strain fitness (log2 ratio)
-2
-1
0
1 at 2980.553 kb on - strand at 2980.782 kb on - strand, within Dsui_2807 at 2980.953 kb on - strand, within Dsui_2807 at 2980.967 kb on + strand, within Dsui_2807 at 2981.048 kb on + strand at 2981.056 kb on - strand, within Dsui_2807 at 2981.181 kb on - strand, within Dsui_2807 at 2981.227 kb on - strand, within Dsui_2807 at 2981.274 kb on + strand, within Dsui_2807 at 2981.384 kb on - strand, within Dsui_2807 at 2981.389 kb on - strand, within Dsui_2807 at 2981.389 kb on - strand, within Dsui_2807 at 2981.465 kb on + strand at 2981.468 kb on - strand at 2981.517 kb on - strand at 2981.550 kb on + strand at 2981.598 kb on + strand at 2981.657 kb on + strand at 2981.665 kb on - strand at 2981.665 kb on - strand at 2981.675 kb on - strand at 2981.705 kb on + strand at 2981.778 kb on + strand at 2981.894 kb on - strand, within Dsui_2808 at 2981.952 kb on + strand, within Dsui_2808 at 2981.971 kb on + strand, within Dsui_2808 at 2981.973 kb on - strand, within Dsui_2808 at 2982.129 kb on - strand, within Dsui_2808 at 2982.232 kb on + strand, within Dsui_2808 at 2982.343 kb on + strand, within Dsui_2808 at 2982.507 kb on + strand, within Dsui_2808 at 2982.510 kb on - strand, within Dsui_2808 at 2982.510 kb on - strand, within Dsui_2808 at 2982.510 kb on - strand, within Dsui_2808 at 2982.564 kb on - strand, within Dsui_2808 at 2982.700 kb on + strand at 2982.826 kb on - strand, within Dsui_2808 at 2983.054 kb on + strand at 2983.122 kb on + strand at 2983.741 kb on - strand, within Dsui_2809 at 2983.827 kb on - strand at 2983.861 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 2,980,553 - -1.0 2,980,782 - Dsui_2807 0.11 -1.4 2,980,953 - Dsui_2807 0.33 -1.4 2,980,967 + Dsui_2807 0.35 -0.4 2,981,048 + -0.4 2,981,056 - Dsui_2807 0.46 -0.6 2,981,181 - Dsui_2807 0.62 -2.3 2,981,227 - Dsui_2807 0.68 -2.2 2,981,274 + Dsui_2807 0.74 -0.4 2,981,384 - Dsui_2807 0.88 +0.6 2,981,389 - Dsui_2807 0.88 +0.6 2,981,389 - Dsui_2807 0.88 -2.4 2,981,465 + +0.6 2,981,468 - +0.6 2,981,517 - -0.5 2,981,550 + -1.4 2,981,598 + -1.4 2,981,657 + +0.6 2,981,665 - -0.4 2,981,665 - -0.6 2,981,675 - -0.4 2,981,705 + +0.6 2,981,778 + -0.4 2,981,894 - Dsui_2808 0.21 -0.5 2,981,952 + Dsui_2808 0.24 +0.6 2,981,971 + Dsui_2808 0.25 -0.4 2,981,973 - Dsui_2808 0.25 +0.6 2,982,129 - Dsui_2808 0.35 -0.1 2,982,232 + Dsui_2808 0.41 +0.6 2,982,343 + Dsui_2808 0.48 -0.4 2,982,507 + Dsui_2808 0.58 +0.6 2,982,510 - Dsui_2808 0.58 -0.4 2,982,510 - Dsui_2808 0.58 -0.2 2,982,510 - Dsui_2808 0.58 -0.9 2,982,564 - Dsui_2808 0.61 -0.0 2,982,700 + +0.6 2,982,826 - Dsui_2808 0.77 -0.6 2,983,054 + -0.4 2,983,122 + -0.4 2,983,741 - Dsui_2809 0.80 -1.0 2,983,827 - -0.4 2,983,861 - +0.6
Or see this region's nucleotide sequence