Strain Fitness in Dechlorosoma suillum PS around Dsui_2806

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2804 and Dsui_2805 are separated by 40 nucleotidesDsui_2805 and Dsui_2806 are separated by 53 nucleotidesDsui_2806 and Dsui_2807 are separated by 130 nucleotidesDsui_2807 and Dsui_2808 are separated by 71 nucleotides Dsui_2804: Dsui_2804 - diguanylate cyclase (GGDEF) domain-containing protein, at 2,974,941 to 2,976,557 _2804 Dsui_2805: Dsui_2805 - EamA-like transporter family, at 2,976,598 to 2,977,467 _2805 Dsui_2806: Dsui_2806 - PAS domain S-box, at 2,977,521 to 2,980,562 _2806 Dsui_2807: Dsui_2807 - enoyl-CoA hydratase/carnithine racemase, at 2,980,693 to 2,981,481 _2807 Dsui_2808: Dsui_2808 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 2,981,553 to 2,983,211 _2808 Position (kb) 2977 2978 2979 2980 2981Strain fitness (log2 ratio) -2 -1 0 1at 2976.537 kb on - strandat 2976.539 kb on + strandat 2976.539 kb on + strandat 2976.819 kb on - strand, within Dsui_2805at 2976.963 kb on - strand, within Dsui_2805at 2977.097 kb on - strand, within Dsui_2805at 2977.433 kb on + strandat 2977.433 kb on + strandat 2977.441 kb on - strandat 2977.441 kb on - strandat 2977.451 kb on - strandat 2977.487 kb on + strandat 2977.490 kb on - strandat 2977.518 kb on - strandat 2977.567 kb on - strandat 2977.615 kb on - strandat 2977.667 kb on + strandat 2977.687 kb on - strandat 2977.736 kb on + strandat 2977.867 kb on - strand, within Dsui_2806at 2978.097 kb on - strand, within Dsui_2806at 2978.228 kb on + strandat 2978.234 kb on - strand, within Dsui_2806at 2978.281 kb on - strandat 2978.560 kb on - strand, within Dsui_2806at 2978.647 kb on - strand, within Dsui_2806at 2978.762 kb on - strand, within Dsui_2806at 2978.764 kb on + strandat 2979.126 kb on + strandat 2979.150 kb on - strand, within Dsui_2806at 2979.171 kb on - strand, within Dsui_2806at 2979.261 kb on - strand, within Dsui_2806at 2979.364 kb on - strand, within Dsui_2806at 2979.421 kb on + strandat 2979.433 kb on - strandat 2979.455 kb on - strandat 2979.715 kb on - strand, within Dsui_2806at 2979.753 kb on - strand, within Dsui_2806at 2979.803 kb on + strandat 2979.811 kb on - strand, within Dsui_2806at 2979.932 kb on - strand, within Dsui_2806at 2979.932 kb on - strand, within Dsui_2806at 2979.952 kb on - strand, within Dsui_2806at 2980.088 kb on + strandat 2980.121 kb on - strand, within Dsui_2806at 2980.379 kb on + strandat 2980.553 kb on - strandat 2980.782 kb on - strand, within Dsui_2807at 2980.953 kb on - strand, within Dsui_2807at 2980.967 kb on + strand, within Dsui_2807at 2981.048 kb on + strandat 2981.056 kb on - strand, within Dsui_2807at 2981.181 kb on - strand, within Dsui_2807at 2981.227 kb on - strand, within Dsui_2807at 2981.274 kb on + strand, within Dsui_2807at 2981.384 kb on - strand, within Dsui_2807at 2981.389 kb on - strand, within Dsui_2807at 2981.389 kb on - strand, within Dsui_2807at 2981.465 kb on + strandat 2981.468 kb on - strandat 2981.517 kb on - strandat 2981.550 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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2,976,537 - -0.1
2,976,539 + +0.6
2,976,539 + -0.4
2,976,819 - Dsui_2805 0.25 -1.0
2,976,963 - Dsui_2805 0.42 -0.6
2,977,097 - Dsui_2805 0.57 -2.6
2,977,433 + -1.7
2,977,433 + -0.4
2,977,441 - -1.4
2,977,441 - +0.6
2,977,451 - -2.4
2,977,487 + +0.6
2,977,490 - +0.6
2,977,518 - -0.6
2,977,567 - +0.6
2,977,615 - +0.6
2,977,667 + -0.4
2,977,687 - +0.6
2,977,736 + +0.6
2,977,867 - Dsui_2806 0.11 -1.0
2,978,097 - Dsui_2806 0.19 -1.4
2,978,228 + +0.6
2,978,234 - Dsui_2806 0.23 -0.4
2,978,281 - +0.6
2,978,560 - Dsui_2806 0.34 -1.0
2,978,647 - Dsui_2806 0.37 -0.4
2,978,762 - Dsui_2806 0.41 -0.4
2,978,764 + -1.4
2,979,126 + +0.6
2,979,150 - Dsui_2806 0.54 +0.6
2,979,171 - Dsui_2806 0.54 -1.8
2,979,261 - Dsui_2806 0.57 +0.6
2,979,364 - Dsui_2806 0.61 -0.4
2,979,421 + -1.0
2,979,433 - +0.6
2,979,455 - +0.6
2,979,715 - Dsui_2806 0.72 +0.6
2,979,753 - Dsui_2806 0.73 -2.0
2,979,803 + -0.4
2,979,811 - Dsui_2806 0.75 -1.0
2,979,932 - Dsui_2806 0.79 +0.2
2,979,932 - Dsui_2806 0.79 +0.6
2,979,952 - Dsui_2806 0.80 -0.4
2,980,088 + +0.6
2,980,121 - Dsui_2806 0.85 +0.6
2,980,379 + +0.6
2,980,553 - -1.0
2,980,782 - Dsui_2807 0.11 -1.4
2,980,953 - Dsui_2807 0.33 -1.4
2,980,967 + Dsui_2807 0.35 -0.4
2,981,048 + -0.4
2,981,056 - Dsui_2807 0.46 -0.6
2,981,181 - Dsui_2807 0.62 -2.3
2,981,227 - Dsui_2807 0.68 -2.2
2,981,274 + Dsui_2807 0.74 -0.4
2,981,384 - Dsui_2807 0.88 +0.6
2,981,389 - Dsui_2807 0.88 +0.6
2,981,389 - Dsui_2807 0.88 -2.4
2,981,465 + +0.6
2,981,468 - +0.6
2,981,517 - -0.5
2,981,550 + -1.4

Or see this region's nucleotide sequence