Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2804 and Dsui_2805 are separated by 40 nucleotides Dsui_2805 and Dsui_2806 are separated by 53 nucleotides Dsui_2806 and Dsui_2807 are separated by 130 nucleotides Dsui_2807 and Dsui_2808 are separated by 71 nucleotides
Dsui_2804: Dsui_2804 - diguanylate cyclase (GGDEF) domain-containing protein, at 2,974,941 to 2,976,557
_2804
Dsui_2805: Dsui_2805 - EamA-like transporter family, at 2,976,598 to 2,977,467
_2805
Dsui_2806: Dsui_2806 - PAS domain S-box, at 2,977,521 to 2,980,562
_2806
Dsui_2807: Dsui_2807 - enoyl-CoA hydratase/carnithine racemase, at 2,980,693 to 2,981,481
_2807
Dsui_2808: Dsui_2808 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 2,981,553 to 2,983,211
_2808
Position (kb)
2977
2978
2979
2980
2981 Strain fitness (log2 ratio)
-2
-1
0
1 at 2976.537 kb on - strand at 2976.539 kb on + strand at 2976.539 kb on + strand at 2976.819 kb on - strand, within Dsui_2805 at 2976.963 kb on - strand, within Dsui_2805 at 2977.097 kb on - strand, within Dsui_2805 at 2977.433 kb on + strand at 2977.433 kb on + strand at 2977.441 kb on - strand at 2977.441 kb on - strand at 2977.451 kb on - strand at 2977.487 kb on + strand at 2977.490 kb on - strand at 2977.518 kb on - strand at 2977.567 kb on - strand at 2977.615 kb on - strand at 2977.667 kb on + strand at 2977.687 kb on - strand at 2977.736 kb on + strand at 2977.867 kb on - strand, within Dsui_2806 at 2978.097 kb on - strand, within Dsui_2806 at 2978.228 kb on + strand at 2978.234 kb on - strand, within Dsui_2806 at 2978.281 kb on - strand at 2978.560 kb on - strand, within Dsui_2806 at 2978.647 kb on - strand, within Dsui_2806 at 2978.762 kb on - strand, within Dsui_2806 at 2978.764 kb on + strand at 2979.126 kb on + strand at 2979.150 kb on - strand, within Dsui_2806 at 2979.171 kb on - strand, within Dsui_2806 at 2979.261 kb on - strand, within Dsui_2806 at 2979.364 kb on - strand, within Dsui_2806 at 2979.421 kb on + strand at 2979.433 kb on - strand at 2979.455 kb on - strand at 2979.715 kb on - strand, within Dsui_2806 at 2979.753 kb on - strand, within Dsui_2806 at 2979.803 kb on + strand at 2979.811 kb on - strand, within Dsui_2806 at 2979.932 kb on - strand, within Dsui_2806 at 2979.932 kb on - strand, within Dsui_2806 at 2979.952 kb on - strand, within Dsui_2806 at 2980.088 kb on + strand at 2980.121 kb on - strand, within Dsui_2806 at 2980.379 kb on + strand at 2980.553 kb on - strand at 2980.782 kb on - strand, within Dsui_2807 at 2980.953 kb on - strand, within Dsui_2807 at 2980.967 kb on + strand, within Dsui_2807 at 2981.048 kb on + strand at 2981.056 kb on - strand, within Dsui_2807 at 2981.181 kb on - strand, within Dsui_2807 at 2981.227 kb on - strand, within Dsui_2807 at 2981.274 kb on + strand, within Dsui_2807 at 2981.384 kb on - strand, within Dsui_2807 at 2981.389 kb on - strand, within Dsui_2807 at 2981.389 kb on - strand, within Dsui_2807 at 2981.465 kb on + strand at 2981.468 kb on - strand at 2981.517 kb on - strand at 2981.550 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 2,976,537 - -0.1 2,976,539 + +0.6 2,976,539 + -0.4 2,976,819 - Dsui_2805 0.25 -1.0 2,976,963 - Dsui_2805 0.42 -0.6 2,977,097 - Dsui_2805 0.57 -2.6 2,977,433 + -1.7 2,977,433 + -0.4 2,977,441 - -1.4 2,977,441 - +0.6 2,977,451 - -2.4 2,977,487 + +0.6 2,977,490 - +0.6 2,977,518 - -0.6 2,977,567 - +0.6 2,977,615 - +0.6 2,977,667 + -0.4 2,977,687 - +0.6 2,977,736 + +0.6 2,977,867 - Dsui_2806 0.11 -1.0 2,978,097 - Dsui_2806 0.19 -1.4 2,978,228 + +0.6 2,978,234 - Dsui_2806 0.23 -0.4 2,978,281 - +0.6 2,978,560 - Dsui_2806 0.34 -1.0 2,978,647 - Dsui_2806 0.37 -0.4 2,978,762 - Dsui_2806 0.41 -0.4 2,978,764 + -1.4 2,979,126 + +0.6 2,979,150 - Dsui_2806 0.54 +0.6 2,979,171 - Dsui_2806 0.54 -1.8 2,979,261 - Dsui_2806 0.57 +0.6 2,979,364 - Dsui_2806 0.61 -0.4 2,979,421 + -1.0 2,979,433 - +0.6 2,979,455 - +0.6 2,979,715 - Dsui_2806 0.72 +0.6 2,979,753 - Dsui_2806 0.73 -2.0 2,979,803 + -0.4 2,979,811 - Dsui_2806 0.75 -1.0 2,979,932 - Dsui_2806 0.79 +0.2 2,979,932 - Dsui_2806 0.79 +0.6 2,979,952 - Dsui_2806 0.80 -0.4 2,980,088 + +0.6 2,980,121 - Dsui_2806 0.85 +0.6 2,980,379 + +0.6 2,980,553 - -1.0 2,980,782 - Dsui_2807 0.11 -1.4 2,980,953 - Dsui_2807 0.33 -1.4 2,980,967 + Dsui_2807 0.35 -0.4 2,981,048 + -0.4 2,981,056 - Dsui_2807 0.46 -0.6 2,981,181 - Dsui_2807 0.62 -2.3 2,981,227 - Dsui_2807 0.68 -2.2 2,981,274 + Dsui_2807 0.74 -0.4 2,981,384 - Dsui_2807 0.88 +0.6 2,981,389 - Dsui_2807 0.88 +0.6 2,981,389 - Dsui_2807 0.88 -2.4 2,981,465 + +0.6 2,981,468 - +0.6 2,981,517 - -0.5 2,981,550 + -1.4
Or see this region's nucleotide sequence