Strain Fitness in Dechlorosoma suillum PS around Dsui_2784

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2783 and Dsui_2784 are separated by 871 nucleotidesDsui_2784 and Dsui_2785 are separated by 147 nucleotides Dsui_2783: Dsui_2783 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,950,288 to 2,951,418 _2783 Dsui_2784: Dsui_2784 - hypothetical protein, at 2,952,290 to 2,952,892 _2784 Dsui_2785: Dsui_2785 - DNA topoisomerase IV, A subunit, proteobacterial, at 2,953,040 to 2,955,583 _2785 Position (kb) 2952 2953Strain fitness (log2 ratio) -3 -2 -1 0 1at 2951.392 kb on + strandat 2951.392 kb on + strandat 2951.392 kb on + strandat 2951.392 kb on + strandat 2951.400 kb on - strandat 2951.415 kb on + strandat 2951.457 kb on - strandat 2951.526 kb on - strandat 2951.584 kb on + strandat 2951.646 kb on - strandat 2951.721 kb on + strandat 2951.736 kb on + strandat 2951.744 kb on - strandat 2951.793 kb on - strandat 2951.916 kb on - strandat 2952.003 kb on - strandat 2952.107 kb on - strandat 2952.174 kb on - strandat 2952.188 kb on - strandat 2952.249 kb on - strandat 2952.277 kb on - strandat 2952.356 kb on - strand, within Dsui_2784at 2952.356 kb on - strand, within Dsui_2784at 2952.357 kb on - strand, within Dsui_2784at 2952.367 kb on - strand, within Dsui_2784at 2952.367 kb on - strand, within Dsui_2784at 2952.367 kb on - strandat 2952.383 kb on + strand, within Dsui_2784at 2952.389 kb on - strandat 2952.406 kb on + strand, within Dsui_2784at 2952.406 kb on + strand, within Dsui_2784at 2952.414 kb on - strand, within Dsui_2784at 2952.438 kb on - strand, within Dsui_2784at 2952.456 kb on + strand, within Dsui_2784at 2952.475 kb on + strand, within Dsui_2784at 2952.511 kb on - strand, within Dsui_2784at 2952.513 kb on + strand, within Dsui_2784at 2952.560 kb on + strand, within Dsui_2784at 2952.560 kb on + strand, within Dsui_2784at 2952.563 kb on + strand, within Dsui_2784at 2952.568 kb on - strand, within Dsui_2784at 2952.569 kb on + strand, within Dsui_2784at 2952.570 kb on + strand, within Dsui_2784at 2952.570 kb on + strand, within Dsui_2784at 2952.570 kb on + strandat 2952.578 kb on - strandat 2952.639 kb on - strandat 2952.642 kb on + strand, within Dsui_2784at 2952.647 kb on + strand, within Dsui_2784at 2952.731 kb on - strandat 2952.773 kb on + strand, within Dsui_2784at 2952.781 kb on - strandat 2952.803 kb on + strand, within Dsui_2784at 2952.809 kb on - strandat 2952.913 kb on + strandat 2953.051 kb on - strandat 2953.051 kb on - strandat 2953.146 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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2,951,392 + -0.1
2,951,392 + +0.6
2,951,392 + -3.2
2,951,392 + -2.2
2,951,400 - -2.0
2,951,415 + -1.0
2,951,457 - +0.6
2,951,526 - +0.6
2,951,584 + -0.4
2,951,646 - -1.0
2,951,721 + -1.0
2,951,736 + -0.4
2,951,744 - +0.6
2,951,793 - +0.6
2,951,916 - -0.4
2,952,003 - -1.7
2,952,107 - +0.6
2,952,174 - +0.6
2,952,188 - -1.4
2,952,249 - +0.6
2,952,277 - +0.6
2,952,356 - Dsui_2784 0.11 +0.6
2,952,356 - Dsui_2784 0.11 +0.6
2,952,357 - Dsui_2784 0.11 -0.4
2,952,367 - Dsui_2784 0.13 +0.6
2,952,367 - Dsui_2784 0.13 +0.6
2,952,367 - +0.6
2,952,383 + Dsui_2784 0.15 +0.3
2,952,389 - +0.6
2,952,406 + Dsui_2784 0.19 -0.4
2,952,406 + Dsui_2784 0.19 +0.6
2,952,414 - Dsui_2784 0.21 -1.7
2,952,438 - Dsui_2784 0.25 +0.6
2,952,456 + Dsui_2784 0.28 +0.6
2,952,475 + Dsui_2784 0.31 -1.0
2,952,511 - Dsui_2784 0.37 -1.7
2,952,513 + Dsui_2784 0.37 -0.4
2,952,560 + Dsui_2784 0.45 +0.6
2,952,560 + Dsui_2784 0.45 +0.6
2,952,563 + Dsui_2784 0.45 +0.6
2,952,568 - Dsui_2784 0.46 -0.4
2,952,569 + Dsui_2784 0.46 -1.0
2,952,570 + Dsui_2784 0.46 +0.6
2,952,570 + Dsui_2784 0.46 +0.6
2,952,570 + +0.6
2,952,578 - -0.4
2,952,639 - +1.6
2,952,642 + Dsui_2784 0.58 +0.6
2,952,647 + Dsui_2784 0.59 +0.6
2,952,731 - +0.6
2,952,773 + Dsui_2784 0.80 +0.6
2,952,781 - +0.6
2,952,803 + Dsui_2784 0.85 +0.6
2,952,809 - +0.6
2,952,913 + -2.0
2,953,051 - -0.9
2,953,051 - -0.5
2,953,146 - -0.8

Or see this region's nucleotide sequence