Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2735 and Dsui_2736 are separated by 51 nucleotides Dsui_2736 and Dsui_2737 are separated by 63 nucleotides Dsui_2737 and Dsui_2738 overlap by 8 nucleotides Dsui_2738 and Dsui_2739 are separated by 129 nucleotides Dsui_2739 and Dsui_2740 are separated by 24 nucleotides
Dsui_2735: Dsui_2735 - glycine cleavage system T protein, at 2,889,524 to 2,890,615
_2735
Dsui_2736: Dsui_2736 - glycine cleavage system H protein, at 2,890,667 to 2,891,053
_2736
Dsui_2737: Dsui_2737 - glycine dehydrogenase, decarboxylating, at 2,891,117 to 2,894,017
_2737
Dsui_2738: Dsui_2738 - glycine cleavage system regulatory protein, at 2,894,010 to 2,894,537
_2738
Dsui_2739: Dsui_2739 - pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component, at 2,894,667 to 2,894,936
_2739
Dsui_2740: Dsui_2740 - putative integral membrane protein, at 2,894,961 to 2,895,698
_2740
Position (kb)
2891
2892
2893
2894
2895 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2890.164 kb on - strand at 2890.169 kb on - strand, within Dsui_2735 at 2890.233 kb on + strand, within Dsui_2735 at 2890.291 kb on + strand, within Dsui_2735 at 2890.291 kb on + strand, within Dsui_2735 at 2890.294 kb on - strand, within Dsui_2735 at 2890.306 kb on + strand, within Dsui_2735 at 2890.314 kb on - strand at 2890.377 kb on + strand, within Dsui_2735 at 2890.390 kb on + strand, within Dsui_2735 at 2890.397 kb on + strand, within Dsui_2735 at 2890.398 kb on - strand at 2890.473 kb on + strand, within Dsui_2735 at 2890.481 kb on - strand, within Dsui_2735 at 2890.481 kb on - strand, within Dsui_2735 at 2890.498 kb on - strand at 2890.563 kb on + strand at 2890.597 kb on + strand at 2890.604 kb on + strand at 2890.612 kb on - strand at 2890.614 kb on + strand at 2890.622 kb on - strand at 2890.622 kb on - strand at 2890.662 kb on + strand at 2890.675 kb on + strand at 2890.676 kb on + strand at 2890.762 kb on + strand, within Dsui_2736 at 2890.772 kb on + strand, within Dsui_2736 at 2890.780 kb on - strand at 2890.818 kb on - strand, within Dsui_2736 at 2890.818 kb on - strand at 2890.938 kb on + strand, within Dsui_2736 at 2890.959 kb on + strand, within Dsui_2736 at 2891.061 kb on + strand at 2891.066 kb on + strand at 2891.071 kb on + strand at 2891.116 kb on - strand at 2891.119 kb on + strand at 2891.119 kb on + strand at 2891.321 kb on + strand at 2891.389 kb on + strand at 2891.415 kb on + strand, within Dsui_2737 at 2891.447 kb on + strand, within Dsui_2737 at 2891.451 kb on + strand, within Dsui_2737 at 2891.474 kb on - strand, within Dsui_2737 at 2891.544 kb on + strand, within Dsui_2737 at 2891.717 kb on - strand, within Dsui_2737 at 2891.761 kb on - strand at 2891.798 kb on + strand, within Dsui_2737 at 2891.906 kb on - strand, within Dsui_2737 at 2892.137 kb on - strand, within Dsui_2737 at 2892.163 kb on - strand, within Dsui_2737 at 2892.247 kb on + strand, within Dsui_2737 at 2892.247 kb on + strand, within Dsui_2737 at 2892.328 kb on + strand, within Dsui_2737 at 2892.328 kb on + strand, within Dsui_2737 at 2892.334 kb on - strand, within Dsui_2737 at 2892.336 kb on - strand at 2892.351 kb on + strand, within Dsui_2737 at 2892.351 kb on + strand, within Dsui_2737 at 2892.536 kb on + strand, within Dsui_2737 at 2892.633 kb on - strand, within Dsui_2737 at 2892.657 kb on + strand, within Dsui_2737 at 2892.753 kb on + strand, within Dsui_2737 at 2892.891 kb on + strand, within Dsui_2737 at 2892.944 kb on - strand, within Dsui_2737 at 2892.978 kb on - strand, within Dsui_2737 at 2893.027 kb on + strand, within Dsui_2737 at 2893.072 kb on + strand, within Dsui_2737 at 2893.158 kb on - strand, within Dsui_2737 at 2893.164 kb on + strand, within Dsui_2737 at 2893.217 kb on + strand, within Dsui_2737 at 2893.402 kb on - strand at 2893.532 kb on + strand, within Dsui_2737 at 2893.535 kb on - strand, within Dsui_2737 at 2893.552 kb on - strand, within Dsui_2737 at 2893.898 kb on + strand at 2894.086 kb on + strand, within Dsui_2738 at 2894.089 kb on + strand, within Dsui_2738 at 2894.161 kb on - strand, within Dsui_2738 at 2894.350 kb on + strand, within Dsui_2738 at 2894.388 kb on + strand, within Dsui_2738 at 2894.388 kb on - strand, within Dsui_2738 at 2894.491 kb on - strand at 2894.564 kb on + strand at 2894.619 kb on + strand at 2894.651 kb on + strand at 2894.659 kb on - strand at 2894.702 kb on - strand, within Dsui_2739 at 2894.774 kb on - strand, within Dsui_2739 at 2894.837 kb on - strand, within Dsui_2739 at 2894.839 kb on + strand at 2895.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 2,890,164 - +0.5 2,890,169 - Dsui_2735 0.59 +0.5 2,890,233 + Dsui_2735 0.65 -0.4 2,890,291 + Dsui_2735 0.70 -0.3 2,890,291 + Dsui_2735 0.70 -0.3 2,890,294 - Dsui_2735 0.71 -0.5 2,890,306 + Dsui_2735 0.72 -0.5 2,890,314 - -0.5 2,890,377 + Dsui_2735 0.78 -0.6 2,890,390 + Dsui_2735 0.79 -0.1 2,890,397 + Dsui_2735 0.80 -0.5 2,890,398 - +0.5 2,890,473 + Dsui_2735 0.87 -0.1 2,890,481 - Dsui_2735 0.88 -0.5 2,890,481 - Dsui_2735 0.88 -1.1 2,890,498 - -1.5 2,890,563 + -0.4 2,890,597 + +0.4 2,890,604 + -0.2 2,890,612 - -0.5 2,890,614 + -0.6 2,890,622 - +0.5 2,890,622 - +0.5 2,890,662 + -1.1 2,890,675 + -1.1 2,890,676 + -0.2 2,890,762 + Dsui_2736 0.25 +0.4 2,890,772 + Dsui_2736 0.27 -0.4 2,890,780 - +0.5 2,890,818 - Dsui_2736 0.39 -1.1 2,890,818 - -0.5 2,890,938 + Dsui_2736 0.70 -0.3 2,890,959 + Dsui_2736 0.75 -0.2 2,891,061 + -0.4 2,891,066 + -0.6 2,891,071 + -0.4 2,891,116 - -1.8 2,891,119 + +0.5 2,891,119 + +0.5 2,891,321 + +0.2 2,891,389 + +0.5 2,891,415 + Dsui_2737 0.10 -0.5 2,891,447 + Dsui_2737 0.11 -0.3 2,891,451 + Dsui_2737 0.12 +1.5 2,891,474 - Dsui_2737 0.12 +0.5 2,891,544 + Dsui_2737 0.15 +0.1 2,891,717 - Dsui_2737 0.21 -0.5 2,891,761 - -1.1 2,891,798 + Dsui_2737 0.23 +0.0 2,891,906 - Dsui_2737 0.27 +0.5 2,892,137 - Dsui_2737 0.35 -0.5 2,892,163 - Dsui_2737 0.36 +0.5 2,892,247 + Dsui_2737 0.39 -2.5 2,892,247 + Dsui_2737 0.39 +1.1 2,892,328 + Dsui_2737 0.42 +0.5 2,892,328 + Dsui_2737 0.42 -1.8 2,892,334 - Dsui_2737 0.42 -0.5 2,892,336 - +0.5 2,892,351 + Dsui_2737 0.43 +0.5 2,892,351 + Dsui_2737 0.43 -1.5 2,892,536 + Dsui_2737 0.49 -3.4 2,892,633 - Dsui_2737 0.52 -0.5 2,892,657 + Dsui_2737 0.53 +0.5 2,892,753 + Dsui_2737 0.56 -1.5 2,892,891 + Dsui_2737 0.61 +0.5 2,892,944 - Dsui_2737 0.63 -1.1 2,892,978 - Dsui_2737 0.64 -2.1 2,893,027 + Dsui_2737 0.66 +0.5 2,893,072 + Dsui_2737 0.67 -2.8 2,893,158 - Dsui_2737 0.70 -1.8 2,893,164 + Dsui_2737 0.71 -0.5 2,893,217 + Dsui_2737 0.72 -1.5 2,893,402 - +0.5 2,893,532 + Dsui_2737 0.83 +0.5 2,893,535 - Dsui_2737 0.83 -1.5 2,893,552 - Dsui_2737 0.84 -0.5 2,893,898 + +0.1 2,894,086 + Dsui_2738 0.14 -0.5 2,894,089 + Dsui_2738 0.15 -2.8 2,894,161 - Dsui_2738 0.29 +0.5 2,894,350 + Dsui_2738 0.64 -1.1 2,894,388 + Dsui_2738 0.72 -1.1 2,894,388 - Dsui_2738 0.72 -0.5 2,894,491 - -2.8 2,894,564 + +0.5 2,894,619 + +0.5 2,894,651 + -1.1 2,894,659 - +0.5 2,894,702 - Dsui_2739 0.13 -0.5 2,894,774 - Dsui_2739 0.40 -0.5 2,894,837 - Dsui_2739 0.63 -0.5 2,894,839 + +0.5 2,895,004 - -0.5
Or see this region's nucleotide sequence