Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2646 and Dsui_2647 are separated by 0 nucleotides Dsui_2647 and Dsui_2648 are separated by 17 nucleotides
Dsui_2646: Dsui_2646 - AAA+ family ATPase, at 2,798,273 to 2,799,445
_2646
Dsui_2647: Dsui_2647 - subtilisin-like serine protease, at 2,799,446 to 2,801,671
_2647
Dsui_2648: Dsui_2648 - site-specific recombinase XerD, at 2,801,689 to 2,802,972
_2648
Position (kb)
2799
2800
2801
2802 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2799.428 kb on + strand at 2799.484 kb on + strand at 2799.487 kb on - strand at 2799.493 kb on - strand at 2799.507 kb on + strand at 2799.532 kb on + strand at 2799.534 kb on + strand at 2799.534 kb on - strand at 2799.550 kb on + strand at 2799.616 kb on + strand at 2799.624 kb on - strand at 2799.624 kb on - strand at 2799.650 kb on + strand at 2799.650 kb on + strand at 2799.655 kb on + strand at 2799.668 kb on - strand at 2799.711 kb on + strand, within Dsui_2647 at 2799.741 kb on + strand, within Dsui_2647 at 2799.769 kb on - strand at 2799.785 kb on + strand, within Dsui_2647 at 2799.835 kb on - strand, within Dsui_2647 at 2800.034 kb on + strand, within Dsui_2647 at 2800.042 kb on - strand, within Dsui_2647 at 2800.140 kb on + strand, within Dsui_2647 at 2800.145 kb on + strand, within Dsui_2647 at 2800.388 kb on - strand, within Dsui_2647 at 2800.465 kb on - strand, within Dsui_2647 at 2800.493 kb on + strand, within Dsui_2647 at 2800.528 kb on + strand, within Dsui_2647 at 2800.528 kb on + strand, within Dsui_2647 at 2800.615 kb on + strand, within Dsui_2647 at 2800.615 kb on + strand, within Dsui_2647 at 2800.615 kb on + strand, within Dsui_2647 at 2800.623 kb on - strand, within Dsui_2647 at 2800.623 kb on - strand, within Dsui_2647 at 2800.652 kb on + strand, within Dsui_2647 at 2800.669 kb on - strand, within Dsui_2647 at 2800.710 kb on + strand, within Dsui_2647 at 2800.807 kb on - strand, within Dsui_2647 at 2800.995 kb on + strand, within Dsui_2647 at 2800.998 kb on - strand, within Dsui_2647 at 2801.030 kb on + strand, within Dsui_2647 at 2801.183 kb on + strand, within Dsui_2647 at 2801.314 kb on + strand, within Dsui_2647 at 2801.334 kb on - strand, within Dsui_2647 at 2801.416 kb on - strand, within Dsui_2647 at 2801.476 kb on + strand at 2801.488 kb on + strand at 2801.550 kb on + strand at 2801.550 kb on + strand at 2801.603 kb on + strand at 2801.610 kb on + strand at 2801.667 kb on + strand at 2801.709 kb on + strand at 2801.858 kb on + strand, within Dsui_2648 at 2801.860 kb on + strand, within Dsui_2648 at 2801.946 kb on + strand, within Dsui_2648 at 2801.954 kb on - strand, within Dsui_2648 at 2802.028 kb on - strand, within Dsui_2648 at 2802.151 kb on - strand at 2802.204 kb on - strand, within Dsui_2648 at 2802.260 kb on + strand, within Dsui_2648 at 2802.269 kb on + strand, within Dsui_2648 at 2802.295 kb on + strand, within Dsui_2648 at 2802.305 kb on + strand, within Dsui_2648 at 2802.313 kb on - strand, within Dsui_2648 at 2802.314 kb on + strand, within Dsui_2648 at 2802.428 kb on + strand, within Dsui_2648 at 2802.441 kb on - strand, within Dsui_2648 at 2802.453 kb on + strand, within Dsui_2648 at 2802.499 kb on - strand, within Dsui_2648 at 2802.569 kb on + strand, within Dsui_2648 at 2802.579 kb on + strand, within Dsui_2648 at 2802.587 kb on - strand, within Dsui_2648 at 2802.646 kb on + strand, within Dsui_2648
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 2,799,428 + -1.5 2,799,484 + -0.1 2,799,487 - -0.5 2,799,493 - +0.5 2,799,507 + -2.1 2,799,532 + -0.7 2,799,534 + -3.1 2,799,534 - +0.5 2,799,550 + +0.5 2,799,616 + -1.1 2,799,624 - +0.5 2,799,624 - -1.5 2,799,650 + -2.1 2,799,650 + -1.1 2,799,655 + +0.5 2,799,668 - -0.5 2,799,711 + Dsui_2647 0.12 -0.5 2,799,741 + Dsui_2647 0.13 +1.5 2,799,769 - +0.5 2,799,785 + Dsui_2647 0.15 -1.1 2,799,835 - Dsui_2647 0.17 +0.5 2,800,034 + Dsui_2647 0.26 -1.1 2,800,042 - Dsui_2647 0.27 +1.5 2,800,140 + Dsui_2647 0.31 -0.3 2,800,145 + Dsui_2647 0.31 -0.5 2,800,388 - Dsui_2647 0.42 -1.1 2,800,465 - Dsui_2647 0.46 -1.1 2,800,493 + Dsui_2647 0.47 -1.5 2,800,528 + Dsui_2647 0.49 -0.5 2,800,528 + Dsui_2647 0.49 -1.1 2,800,615 + Dsui_2647 0.53 -1.1 2,800,615 + Dsui_2647 0.53 -0.5 2,800,615 + Dsui_2647 0.53 +0.5 2,800,623 - Dsui_2647 0.53 +0.5 2,800,623 - Dsui_2647 0.53 -0.5 2,800,652 + Dsui_2647 0.54 -1.7 2,800,669 - Dsui_2647 0.55 +0.5 2,800,710 + Dsui_2647 0.57 +0.5 2,800,807 - Dsui_2647 0.61 -1.1 2,800,995 + Dsui_2647 0.70 -1.1 2,800,998 - Dsui_2647 0.70 -1.1 2,801,030 + Dsui_2647 0.71 -0.5 2,801,183 + Dsui_2647 0.78 -0.3 2,801,314 + Dsui_2647 0.84 +0.5 2,801,334 - Dsui_2647 0.85 -0.5 2,801,416 - Dsui_2647 0.88 +0.5 2,801,476 + +0.5 2,801,488 + -0.5 2,801,550 + -1.8 2,801,550 + -0.1 2,801,603 + +0.5 2,801,610 + -2.4 2,801,667 + -1.8 2,801,709 + -0.1 2,801,858 + Dsui_2648 0.13 -0.5 2,801,860 + Dsui_2648 0.13 -1.1 2,801,946 + Dsui_2648 0.20 -0.5 2,801,954 - Dsui_2648 0.21 +0.5 2,802,028 - Dsui_2648 0.26 +0.5 2,802,151 - +0.5 2,802,204 - Dsui_2648 0.40 +0.5 2,802,260 + Dsui_2648 0.44 +0.5 2,802,269 + Dsui_2648 0.45 +0.5 2,802,295 + Dsui_2648 0.47 -1.1 2,802,305 + Dsui_2648 0.48 -0.5 2,802,313 - Dsui_2648 0.49 +0.5 2,802,314 + Dsui_2648 0.49 -1.8 2,802,428 + Dsui_2648 0.58 -2.3 2,802,441 - Dsui_2648 0.59 -0.5 2,802,453 + Dsui_2648 0.60 -0.1 2,802,499 - Dsui_2648 0.63 -1.1 2,802,569 + Dsui_2648 0.69 -2.7 2,802,579 + Dsui_2648 0.69 -1.1 2,802,587 - Dsui_2648 0.70 -0.5 2,802,646 + Dsui_2648 0.75 -2.1
Or see this region's nucleotide sequence