Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2637 and Dsui_2638 are separated by 80 nucleotides Dsui_2638 and Dsui_2639 are separated by 21 nucleotides Dsui_2639 and Dsui_2640 are separated by 96 nucleotides Dsui_2640 and Dsui_2641 are separated by 29 nucleotides
Dsui_2637: Dsui_2637 - outer membrane protein, at 2,789,813 to 2,791,084
_2637
Dsui_2638: Dsui_2638 - hypothetical protein, at 2,791,165 to 2,791,509
_2638
Dsui_2639: Dsui_2639 - putative metal-binding protein, at 2,791,531 to 2,791,971
_2639
Dsui_2640: Dsui_2640 - Cytochrome c, at 2,792,068 to 2,792,730
_2640
Dsui_2641: Dsui_2641 - putative multicopper oxidase, at 2,792,760 to 2,794,169
_2641
Position (kb)
2791
2792 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2790.647 kb on - strand, within Dsui_2637 at 2790.695 kb on - strand, within Dsui_2637 at 2790.697 kb on + strand, within Dsui_2637 at 2790.705 kb on - strand, within Dsui_2637 at 2790.946 kb on + strand, within Dsui_2637 at 2790.946 kb on + strand, within Dsui_2637 at 2790.977 kb on - strand at 2790.987 kb on - strand at 2790.991 kb on - strand at 2791.015 kb on - strand at 2791.135 kb on + strand at 2791.143 kb on + strand at 2791.151 kb on - strand at 2791.210 kb on - strand, within Dsui_2638 at 2791.306 kb on + strand, within Dsui_2638 at 2791.369 kb on - strand, within Dsui_2638 at 2791.369 kb on - strand, within Dsui_2638 at 2791.439 kb on + strand, within Dsui_2638 at 2791.460 kb on + strand, within Dsui_2638 at 2791.503 kb on - strand at 2791.546 kb on + strand at 2791.564 kb on + strand at 2791.604 kb on - strand, within Dsui_2639 at 2791.662 kb on - strand, within Dsui_2639 at 2791.728 kb on + strand, within Dsui_2639 at 2791.773 kb on - strand, within Dsui_2639 at 2791.801 kb on - strand, within Dsui_2639 at 2791.884 kb on - strand, within Dsui_2639 at 2791.928 kb on - strand at 2791.958 kb on - strand at 2791.998 kb on - strand at 2792.011 kb on - strand at 2792.065 kb on + strand at 2792.065 kb on + strand at 2792.073 kb on - strand at 2792.088 kb on + strand at 2792.096 kb on - strand at 2792.096 kb on - strand at 2792.103 kb on - strand at 2792.240 kb on + strand, within Dsui_2640 at 2792.256 kb on - strand, within Dsui_2640 at 2792.320 kb on + strand, within Dsui_2640 at 2792.431 kb on - strand, within Dsui_2640 at 2792.436 kb on - strand, within Dsui_2640 at 2792.510 kb on - strand, within Dsui_2640 at 2792.708 kb on + strand at 2792.754 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 2,790,647 - Dsui_2637 0.66 -0.5 2,790,695 - Dsui_2637 0.69 -1.5 2,790,697 + Dsui_2637 0.69 -0.5 2,790,705 - Dsui_2637 0.70 -1.5 2,790,946 + Dsui_2637 0.89 -1.8 2,790,946 + Dsui_2637 0.89 -1.1 2,790,977 - -0.5 2,790,987 - -0.5 2,790,991 - +0.5 2,791,015 - -1.1 2,791,135 + +0.5 2,791,143 + +0.5 2,791,151 - +0.5 2,791,210 - Dsui_2638 0.13 -0.5 2,791,306 + Dsui_2638 0.41 -0.1 2,791,369 - Dsui_2638 0.59 -2.1 2,791,369 - Dsui_2638 0.59 +0.5 2,791,439 + Dsui_2638 0.79 -1.1 2,791,460 + Dsui_2638 0.86 +0.5 2,791,503 - -3.1 2,791,546 + -0.5 2,791,564 + +0.5 2,791,604 - Dsui_2639 0.17 -1.1 2,791,662 - Dsui_2639 0.30 +0.5 2,791,728 + Dsui_2639 0.45 +0.5 2,791,773 - Dsui_2639 0.55 +0.5 2,791,801 - Dsui_2639 0.61 +0.5 2,791,884 - Dsui_2639 0.80 +0.5 2,791,928 - -0.5 2,791,958 - +0.5 2,791,998 - +0.5 2,792,011 - -0.5 2,792,065 + -0.5 2,792,065 + +0.5 2,792,073 - -1.1 2,792,088 + +0.5 2,792,096 - +0.5 2,792,096 - +0.5 2,792,103 - -1.1 2,792,240 + Dsui_2640 0.26 +0.5 2,792,256 - Dsui_2640 0.28 +0.5 2,792,320 + Dsui_2640 0.38 -1.5 2,792,431 - Dsui_2640 0.55 +0.5 2,792,436 - Dsui_2640 0.56 -0.5 2,792,510 - Dsui_2640 0.67 -1.1 2,792,708 + -0.5 2,792,754 - -0.5
Or see this region's nucleotide sequence