Strain Fitness in Dechlorosoma suillum PS around Dsui_2534

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2532 and Dsui_2533 are separated by 70 nucleotidesDsui_2533 and Dsui_2534 overlap by 4 nucleotidesDsui_2534 and Dsui_2535 are separated by 75 nucleotidesDsui_2535 and Dsui_2536 overlap by 66 nucleotides Dsui_2532: Dsui_2532 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 2,684,058 to 2,685,083 _2532 Dsui_2533: Dsui_2533 - TRAP-type C4-dicarboxylate transport system, small permease component, at 2,685,154 to 2,685,639 _2533 Dsui_2534: Dsui_2534 - TRAP transporter, DctM subunit, at 2,685,636 to 2,686,925 _2534 Dsui_2535: Dsui_2535 - putative divalent heavy-metal cations transporter, at 2,687,001 to 2,687,774 _2535 Dsui_2536: Dsui_2536 - hypothetical protein, at 2,687,709 to 2,688,020 _2536 Position (kb) 2685 2686 2687Strain fitness (log2 ratio) -3 -2 -1 0 1at 2684.680 kb on - strand, within Dsui_2532at 2684.732 kb on + strand, within Dsui_2532at 2684.746 kb on - strandat 2684.756 kb on - strandat 2684.765 kb on - strand, within Dsui_2532at 2684.806 kb on - strandat 2684.868 kb on + strand, within Dsui_2532at 2685.006 kb on + strandat 2685.047 kb on - strandat 2685.226 kb on + strand, within Dsui_2533at 2685.234 kb on - strand, within Dsui_2533at 2685.325 kb on + strand, within Dsui_2533at 2685.438 kb on - strandat 2685.466 kb on + strand, within Dsui_2533at 2685.532 kb on - strand, within Dsui_2533at 2685.585 kb on + strand, within Dsui_2533at 2685.636 kb on - strandat 2685.699 kb on + strandat 2685.744 kb on + strandat 2685.852 kb on + strand, within Dsui_2534at 2685.855 kb on - strand, within Dsui_2534at 2685.921 kb on + strand, within Dsui_2534at 2686.119 kb on + strand, within Dsui_2534at 2686.160 kb on - strandat 2686.205 kb on - strandat 2686.283 kb on - strand, within Dsui_2534at 2686.468 kb on - strand, within Dsui_2534at 2686.496 kb on - strandat 2686.675 kb on + strand, within Dsui_2534at 2686.680 kb on + strand, within Dsui_2534at 2686.734 kb on - strandat 2686.828 kb on - strandat 2687.077 kb on + strandat 2687.101 kb on + strand, within Dsui_2535at 2687.200 kb on - strand, within Dsui_2535at 2687.386 kb on - strand, within Dsui_2535at 2687.518 kb on - strandat 2687.569 kb on + strand, within Dsui_2535at 2687.689 kb on + strand, within Dsui_2535at 2687.695 kb on + strand, within Dsui_2535at 2687.768 kb on + strandat 2687.776 kb on - strand, within Dsui_2536at 2687.860 kb on - strand, within Dsui_2536at 2687.860 kb on - strand, within Dsui_2536at 2687.896 kb on - strand, within Dsui_2536

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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2,684,680 - Dsui_2532 0.61 -0.5
2,684,732 + Dsui_2532 0.66 -0.3
2,684,746 - -0.5
2,684,756 - +0.5
2,684,765 - Dsui_2532 0.69 -0.5
2,684,806 - +0.5
2,684,868 + Dsui_2532 0.79 -0.4
2,685,006 + -0.7
2,685,047 - -0.5
2,685,226 + Dsui_2533 0.15 -2.1
2,685,234 - Dsui_2533 0.16 +0.5
2,685,325 + Dsui_2533 0.35 -0.5
2,685,438 - -0.5
2,685,466 + Dsui_2533 0.64 -1.3
2,685,532 - Dsui_2533 0.78 -1.9
2,685,585 + Dsui_2533 0.89 -1.5
2,685,636 - +0.5
2,685,699 + -0.1
2,685,744 + +0.6
2,685,852 + Dsui_2534 0.17 -2.3
2,685,855 - Dsui_2534 0.17 +0.5
2,685,921 + Dsui_2534 0.22 +0.5
2,686,119 + Dsui_2534 0.37 +0.5
2,686,160 - +0.5
2,686,205 - +0.5
2,686,283 - Dsui_2534 0.50 -1.1
2,686,468 - Dsui_2534 0.64 +0.5
2,686,496 - +0.5
2,686,675 + Dsui_2534 0.81 -3.1
2,686,680 + Dsui_2534 0.81 -1.8
2,686,734 - -0.5
2,686,828 - -1.9
2,687,077 + +0.1
2,687,101 + Dsui_2535 0.13 -0.1
2,687,200 - Dsui_2535 0.26 -1.5
2,687,386 - Dsui_2535 0.50 -1.9
2,687,518 - +0.5
2,687,569 + Dsui_2535 0.73 -0.4
2,687,689 + Dsui_2535 0.89 -0.4
2,687,695 + Dsui_2535 0.90 -0.5
2,687,768 + -0.2
2,687,776 - Dsui_2536 0.21 -0.1
2,687,860 - Dsui_2536 0.48 -1.1
2,687,860 - Dsui_2536 0.48 -0.7
2,687,896 - Dsui_2536 0.60 -0.0

Or see this region's nucleotide sequence