Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2421 and Dsui_2422 are separated by 47 nucleotides Dsui_2422 and Dsui_2423 are separated by 270 nucleotides Dsui_2423 and Dsui_2424 are separated by 5 nucleotides Dsui_2424 and Dsui_2425 are separated by 39 nucleotides
Dsui_2421: Dsui_2421 - EAL domain-containing protein, at 2,579,922 to 2,581,223
_2421
Dsui_2422: Dsui_2422 - truncated hemoglobin, at 2,581,271 to 2,581,657
_2422
Dsui_2423: Dsui_2423 - GTP-binding protein TypA/BipA, at 2,581,928 to 2,583,742
_2423
Dsui_2424: Dsui_2424 - hypothetical protein, at 2,583,748 to 2,583,906
_2424
Dsui_2425: Dsui_2425 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,583,946 to 2,585,865
_2425
Position (kb)
2581
2582
2583
2584 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2580.937 kb on - strand, within Dsui_2421 at 2580.958 kb on + strand, within Dsui_2421 at 2580.958 kb on + strand, within Dsui_2421 at 2580.976 kb on + strand, within Dsui_2421 at 2580.989 kb on + strand, within Dsui_2421 at 2581.029 kb on + strand, within Dsui_2421 at 2581.153 kb on + strand at 2581.181 kb on + strand at 2581.198 kb on - strand at 2581.198 kb on - strand at 2581.307 kb on + strand at 2581.398 kb on + strand, within Dsui_2422 at 2581.406 kb on - strand at 2581.407 kb on + strand, within Dsui_2422 at 2581.413 kb on + strand at 2581.451 kb on - strand, within Dsui_2422 at 2581.530 kb on + strand, within Dsui_2422 at 2581.556 kb on + strand, within Dsui_2422 at 2581.563 kb on + strand, within Dsui_2422 at 2581.749 kb on + strand at 2581.842 kb on + strand at 2581.886 kb on + strand at 2581.886 kb on + strand at 2583.857 kb on - strand, within Dsui_2424 at 2583.984 kb on + strand at 2584.070 kb on + strand at 2584.091 kb on - strand at 2584.170 kb on - strand, within Dsui_2425 at 2584.230 kb on - strand, within Dsui_2425 at 2584.332 kb on + strand, within Dsui_2425 at 2584.353 kb on - strand, within Dsui_2425 at 2584.516 kb on + strand, within Dsui_2425 at 2584.532 kb on - strand, within Dsui_2425 at 2584.661 kb on - strand, within Dsui_2425
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 2,580,937 - Dsui_2421 0.78 -0.2 2,580,958 + Dsui_2421 0.80 -0.2 2,580,958 + Dsui_2421 0.80 -0.3 2,580,976 + Dsui_2421 0.81 -1.8 2,580,989 + Dsui_2421 0.82 -0.5 2,581,029 + Dsui_2421 0.85 -1.6 2,581,153 + -0.9 2,581,181 + -1.2 2,581,198 - +0.3 2,581,198 - -0.3 2,581,307 + -0.5 2,581,398 + Dsui_2422 0.33 -0.5 2,581,406 - -1.8 2,581,407 + Dsui_2422 0.35 -0.7 2,581,413 + +0.8 2,581,451 - Dsui_2422 0.47 -1.1 2,581,530 + Dsui_2422 0.67 -0.8 2,581,556 + Dsui_2422 0.74 -0.3 2,581,563 + Dsui_2422 0.75 -2.9 2,581,749 + -2.3 2,581,842 + -0.0 2,581,886 + -0.4 2,581,886 + -0.0 2,583,857 - Dsui_2424 0.69 -2.5 2,583,984 + -0.5 2,584,070 + -0.5 2,584,091 - -1.6 2,584,170 - Dsui_2425 0.12 -3.2 2,584,230 - Dsui_2425 0.15 -0.6 2,584,332 + Dsui_2425 0.20 +0.5 2,584,353 - Dsui_2425 0.21 -0.3 2,584,516 + Dsui_2425 0.30 +0.5 2,584,532 - Dsui_2425 0.31 -0.6 2,584,661 - Dsui_2425 0.37 -0.4
Or see this region's nucleotide sequence