Strain Fitness in Dechlorosoma suillum PS around Dsui_2340

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2339 and Dsui_2340 are separated by 4 nucleotidesDsui_2340 and Dsui_2341 are separated by 4 nucleotidesDsui_2341 and Dsui_2342 are separated by 1 nucleotides Dsui_2339: Dsui_2339 - putative domain HDIG-containing protein, at 2,490,723 to 2,491,634 _2339 Dsui_2340: Dsui_2340 - ABC-type multidrug transport system, permease component, at 2,491,639 to 2,492,772 _2340 Dsui_2341: Dsui_2341 - ABC-type multidrug transport system, ATPase component, at 2,492,777 to 2,493,721 _2341 Dsui_2342: Dsui_2342 - multidrug resistance efflux pump, at 2,493,723 to 2,494,688 _2342 Position (kb) 2491 2492 2493Strain fitness (log2 ratio) -2 -1 0 1at 2490.674 kb on + strandat 2490.692 kb on + strandat 2490.743 kb on - strandat 2490.812 kb on + strandat 2490.812 kb on + strandat 2490.812 kb on + strandat 2490.820 kb on - strandat 2490.820 kb on - strandat 2490.850 kb on + strand, within Dsui_2339at 2490.990 kb on - strand, within Dsui_2339at 2491.033 kb on + strand, within Dsui_2339at 2491.041 kb on + strandat 2491.051 kb on + strand, within Dsui_2339at 2491.087 kb on - strandat 2491.190 kb on - strand, within Dsui_2339at 2491.240 kb on - strandat 2491.431 kb on - strandat 2491.539 kb on + strand, within Dsui_2339at 2491.613 kb on + strandat 2491.675 kb on + strandat 2491.676 kb on - strandat 2491.729 kb on + strandat 2491.764 kb on - strand, within Dsui_2340at 2491.794 kb on - strand, within Dsui_2340at 2491.799 kb on - strand, within Dsui_2340at 2491.801 kb on - strand, within Dsui_2340at 2491.814 kb on - strand, within Dsui_2340at 2491.857 kb on + strand, within Dsui_2340at 2491.903 kb on - strand, within Dsui_2340at 2491.928 kb on + strand, within Dsui_2340at 2491.952 kb on + strand, within Dsui_2340at 2491.965 kb on + strand, within Dsui_2340at 2491.973 kb on + strand, within Dsui_2340at 2491.976 kb on - strand, within Dsui_2340at 2491.981 kb on - strand, within Dsui_2340at 2492.042 kb on - strandat 2492.042 kb on - strand, within Dsui_2340at 2492.042 kb on - strand, within Dsui_2340at 2492.042 kb on - strand, within Dsui_2340at 2492.189 kb on - strand, within Dsui_2340at 2492.204 kb on - strand, within Dsui_2340at 2492.310 kb on + strandat 2492.487 kb on - strand, within Dsui_2340at 2492.624 kb on - strand, within Dsui_2340at 2492.684 kb on - strandat 2492.753 kb on - strandat 2492.753 kb on - strandat 2492.796 kb on + strandat 2492.799 kb on - strandat 2492.983 kb on + strandat 2492.991 kb on - strand, within Dsui_2341at 2493.021 kb on - strand, within Dsui_2341at 2493.067 kb on - strand, within Dsui_2341at 2493.170 kb on - strand, within Dsui_2341at 2493.219 kb on - strand, within Dsui_2341at 2493.455 kb on + strandat 2493.507 kb on - strand, within Dsui_2341at 2493.544 kb on + strandat 2493.638 kb on - strandat 2493.751 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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2,490,674 + -1.3
2,490,692 + -1.5
2,490,743 - -0.4
2,490,812 + -2.2
2,490,812 + +0.6
2,490,812 + -1.4
2,490,820 - +0.6
2,490,820 - +0.6
2,490,850 + Dsui_2339 0.14 -0.4
2,490,990 - Dsui_2339 0.29 -2.2
2,491,033 + Dsui_2339 0.34 +0.6
2,491,041 + +0.6
2,491,051 + Dsui_2339 0.36 +0.6
2,491,087 - +0.6
2,491,190 - Dsui_2339 0.51 -1.4
2,491,240 - +0.6
2,491,431 - -0.4
2,491,539 + Dsui_2339 0.89 +0.6
2,491,613 + -0.1
2,491,675 + +0.6
2,491,676 - -0.4
2,491,729 + +0.6
2,491,764 - Dsui_2340 0.11 -0.4
2,491,794 - Dsui_2340 0.14 +0.6
2,491,799 - Dsui_2340 0.14 -0.4
2,491,801 - Dsui_2340 0.14 +0.6
2,491,814 - Dsui_2340 0.15 -0.4
2,491,857 + Dsui_2340 0.19 -0.4
2,491,903 - Dsui_2340 0.23 +0.6
2,491,928 + Dsui_2340 0.25 -0.8
2,491,952 + Dsui_2340 0.28 -1.0
2,491,965 + Dsui_2340 0.29 -1.0
2,491,973 + Dsui_2340 0.29 -1.4
2,491,976 - Dsui_2340 0.30 -0.4
2,491,981 - Dsui_2340 0.30 +0.6
2,492,042 - +0.6
2,492,042 - Dsui_2340 0.36 -0.4
2,492,042 - Dsui_2340 0.36 -0.4
2,492,042 - Dsui_2340 0.36 -0.4
2,492,189 - Dsui_2340 0.49 -0.4
2,492,204 - Dsui_2340 0.50 -1.0
2,492,310 + -0.4
2,492,487 - Dsui_2340 0.75 -0.4
2,492,624 - Dsui_2340 0.87 -0.4
2,492,684 - +0.6
2,492,753 - +0.6
2,492,753 - +1.6
2,492,796 + -1.2
2,492,799 - -0.4
2,492,983 + +0.6
2,492,991 - Dsui_2341 0.23 -1.4
2,493,021 - Dsui_2341 0.26 -0.4
2,493,067 - Dsui_2341 0.31 -1.0
2,493,170 - Dsui_2341 0.42 +0.6
2,493,219 - Dsui_2341 0.47 -1.4
2,493,455 + +0.6
2,493,507 - Dsui_2341 0.77 -1.7
2,493,544 + +0.6
2,493,638 - -0.4
2,493,751 - -0.4

Or see this region's nucleotide sequence