Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2339 and Dsui_2340 are separated by 4 nucleotides Dsui_2340 and Dsui_2341 are separated by 4 nucleotides Dsui_2341 and Dsui_2342 are separated by 1 nucleotides
Dsui_2339: Dsui_2339 - putative domain HDIG-containing protein, at 2,490,723 to 2,491,634
_2339
Dsui_2340: Dsui_2340 - ABC-type multidrug transport system, permease component, at 2,491,639 to 2,492,772
_2340
Dsui_2341: Dsui_2341 - ABC-type multidrug transport system, ATPase component, at 2,492,777 to 2,493,721
_2341
Dsui_2342: Dsui_2342 - multidrug resistance efflux pump, at 2,493,723 to 2,494,688
_2342
Position (kb)
2491
2492
2493 Strain fitness (log2 ratio)
-2
-1
0
1 at 2490.674 kb on + strand at 2490.692 kb on + strand at 2490.743 kb on - strand at 2490.812 kb on + strand at 2490.812 kb on + strand at 2490.812 kb on + strand at 2490.820 kb on - strand at 2490.820 kb on - strand at 2490.850 kb on + strand, within Dsui_2339 at 2490.990 kb on - strand, within Dsui_2339 at 2491.033 kb on + strand, within Dsui_2339 at 2491.041 kb on + strand at 2491.051 kb on + strand, within Dsui_2339 at 2491.087 kb on - strand at 2491.190 kb on - strand, within Dsui_2339 at 2491.240 kb on - strand at 2491.431 kb on - strand at 2491.539 kb on + strand, within Dsui_2339 at 2491.613 kb on + strand at 2491.675 kb on + strand at 2491.676 kb on - strand at 2491.729 kb on + strand at 2491.764 kb on - strand, within Dsui_2340 at 2491.794 kb on - strand, within Dsui_2340 at 2491.799 kb on - strand, within Dsui_2340 at 2491.801 kb on - strand, within Dsui_2340 at 2491.814 kb on - strand, within Dsui_2340 at 2491.857 kb on + strand, within Dsui_2340 at 2491.903 kb on - strand, within Dsui_2340 at 2491.928 kb on + strand, within Dsui_2340 at 2491.952 kb on + strand, within Dsui_2340 at 2491.965 kb on + strand, within Dsui_2340 at 2491.973 kb on + strand, within Dsui_2340 at 2491.976 kb on - strand, within Dsui_2340 at 2491.981 kb on - strand, within Dsui_2340 at 2492.042 kb on - strand at 2492.042 kb on - strand, within Dsui_2340 at 2492.042 kb on - strand, within Dsui_2340 at 2492.042 kb on - strand, within Dsui_2340 at 2492.189 kb on - strand, within Dsui_2340 at 2492.204 kb on - strand, within Dsui_2340 at 2492.310 kb on + strand at 2492.487 kb on - strand, within Dsui_2340 at 2492.624 kb on - strand, within Dsui_2340 at 2492.684 kb on - strand at 2492.753 kb on - strand at 2492.753 kb on - strand at 2492.796 kb on + strand at 2492.799 kb on - strand at 2492.983 kb on + strand at 2492.991 kb on - strand, within Dsui_2341 at 2493.021 kb on - strand, within Dsui_2341 at 2493.067 kb on - strand, within Dsui_2341 at 2493.170 kb on - strand, within Dsui_2341 at 2493.219 kb on - strand, within Dsui_2341 at 2493.455 kb on + strand at 2493.507 kb on - strand, within Dsui_2341 at 2493.544 kb on + strand at 2493.638 kb on - strand at 2493.751 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 2,490,674 + -1.3 2,490,692 + -1.5 2,490,743 - -0.4 2,490,812 + -2.2 2,490,812 + +0.6 2,490,812 + -1.4 2,490,820 - +0.6 2,490,820 - +0.6 2,490,850 + Dsui_2339 0.14 -0.4 2,490,990 - Dsui_2339 0.29 -2.2 2,491,033 + Dsui_2339 0.34 +0.6 2,491,041 + +0.6 2,491,051 + Dsui_2339 0.36 +0.6 2,491,087 - +0.6 2,491,190 - Dsui_2339 0.51 -1.4 2,491,240 - +0.6 2,491,431 - -0.4 2,491,539 + Dsui_2339 0.89 +0.6 2,491,613 + -0.1 2,491,675 + +0.6 2,491,676 - -0.4 2,491,729 + +0.6 2,491,764 - Dsui_2340 0.11 -0.4 2,491,794 - Dsui_2340 0.14 +0.6 2,491,799 - Dsui_2340 0.14 -0.4 2,491,801 - Dsui_2340 0.14 +0.6 2,491,814 - Dsui_2340 0.15 -0.4 2,491,857 + Dsui_2340 0.19 -0.4 2,491,903 - Dsui_2340 0.23 +0.6 2,491,928 + Dsui_2340 0.25 -0.8 2,491,952 + Dsui_2340 0.28 -1.0 2,491,965 + Dsui_2340 0.29 -1.0 2,491,973 + Dsui_2340 0.29 -1.4 2,491,976 - Dsui_2340 0.30 -0.4 2,491,981 - Dsui_2340 0.30 +0.6 2,492,042 - +0.6 2,492,042 - Dsui_2340 0.36 -0.4 2,492,042 - Dsui_2340 0.36 -0.4 2,492,042 - Dsui_2340 0.36 -0.4 2,492,189 - Dsui_2340 0.49 -0.4 2,492,204 - Dsui_2340 0.50 -1.0 2,492,310 + -0.4 2,492,487 - Dsui_2340 0.75 -0.4 2,492,624 - Dsui_2340 0.87 -0.4 2,492,684 - +0.6 2,492,753 - +0.6 2,492,753 - +1.6 2,492,796 + -1.2 2,492,799 - -0.4 2,492,983 + +0.6 2,492,991 - Dsui_2341 0.23 -1.4 2,493,021 - Dsui_2341 0.26 -0.4 2,493,067 - Dsui_2341 0.31 -1.0 2,493,170 - Dsui_2341 0.42 +0.6 2,493,219 - Dsui_2341 0.47 -1.4 2,493,455 + +0.6 2,493,507 - Dsui_2341 0.77 -1.7 2,493,544 + +0.6 2,493,638 - -0.4 2,493,751 - -0.4
Or see this region's nucleotide sequence