Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2313 and Dsui_2314 overlap by 4 nucleotides Dsui_2314 and Dsui_2315 overlap by 1 nucleotides Dsui_2315 and Dsui_2316 are separated by 10 nucleotides Dsui_2316 and Dsui_2317 are separated by 39 nucleotides
Dsui_2313: Dsui_2313 - CTP synthase, at 2,468,731 to 2,470,371
_2313
Dsui_2314: Dsui_2314 - 3-deoxy-8-phosphooctulonate synthase, at 2,470,368 to 2,471,207
_2314
Dsui_2315: Dsui_2315 - Stress responsive A/B Barrel Domain-containing protein, at 2,471,207 to 2,471,500
_2315
Dsui_2316: Dsui_2316 - hypothetical protein, at 2,471,511 to 2,471,801
_2316
Dsui_2317: Dsui_2317 - phosphopyruvate hydratase, at 2,471,841 to 2,473,124
_2317
Position (kb) 2471
2472 Strain fitness (log2 ratio) -2
-1
0
1 at 2470.340 kb on + strand at 2471.171 kb on + strand at 2471.171 kb on + strand at 2471.176 kb on + strand at 2471.235 kb on - strand at 2471.238 kb on + strand, within Dsui_2315 at 2471.345 kb on - strand at 2471.437 kb on + strand, within Dsui_2315 at 2471.574 kb on - strand, within Dsui_2316 at 2471.703 kb on - strand, within Dsui_2316 at 2471.769 kb on + strand, within Dsui_2316
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 2,470,340 + -1.9 2,471,171 + -0.9 2,471,171 + -0.5 2,471,176 + -0.2 2,471,235 - -1.0 2,471,238 + Dsui_2315 0.11 +0.3 2,471,345 - -1.0 2,471,437 + Dsui_2315 0.78 +0.0 2,471,574 - Dsui_2316 0.22 +0.6 2,471,703 - Dsui_2316 0.66 -1.4 2,471,769 + Dsui_2316 0.89 -0.0
Or see this region's nucleotide sequence