Strain Fitness in Dechlorosoma suillum PS around Dsui_2291

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2289 and Dsui_2290 overlap by 8 nucleotidesDsui_2290 and Dsui_2291 overlap by 4 nucleotidesDsui_2291 and Dsui_2292 are separated by 37 nucleotidesDsui_2292 and Dsui_2293 are separated by 156 nucleotides Dsui_2289: Dsui_2289 - qaraquat-inducible protein B, at 2,443,404 to 2,444,975 _2289 Dsui_2290: Dsui_2290 - putative paraquat-inducible protein A, at 2,444,968 to 2,445,633 _2290 Dsui_2291: Dsui_2291 - putative paraquat-inducible protein A, at 2,445,630 to 2,446,265 _2291 Dsui_2292: Dsui_2292 - RRM domain-containing RNA-binding protein, at 2,446,303 to 2,446,542 _2292 Dsui_2293: Dsui_2293 - poly(3-hydroxyalkanoate) synthetase, at 2,446,699 to 2,448,483 _2293 Position (kb) 2445 2446 2447Strain fitness (log2 ratio) -2 -1 0 1at 2444.836 kb on + strandat 2444.875 kb on - strandat 2444.914 kb on - strandat 2445.119 kb on - strand, within Dsui_2290at 2445.148 kb on - strand, within Dsui_2290at 2445.166 kb on - strand, within Dsui_2290at 2445.189 kb on + strandat 2445.197 kb on - strand, within Dsui_2290at 2445.221 kb on + strandat 2445.287 kb on - strand, within Dsui_2290at 2445.323 kb on - strand, within Dsui_2290at 2445.356 kb on - strandat 2445.829 kb on - strand, within Dsui_2291at 2445.923 kb on - strand, within Dsui_2291at 2445.975 kb on + strandat 2446.076 kb on + strandat 2446.077 kb on - strandat 2446.094 kb on + strand, within Dsui_2291at 2446.158 kb on - strand, within Dsui_2291at 2446.158 kb on - strand, within Dsui_2291at 2446.158 kb on - strandat 2446.296 kb on - strandat 2446.518 kb on + strandat 2446.584 kb on - strandat 2446.739 kb on + strandat 2446.870 kb on + strandat 2446.879 kb on - strandat 2446.971 kb on - strandat 2447.024 kb on + strand, within Dsui_2293at 2447.025 kb on - strandat 2447.182 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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2,444,836 + -0.4
2,444,875 - +0.6
2,444,914 - +0.6
2,445,119 - Dsui_2290 0.23 -1.7
2,445,148 - Dsui_2290 0.27 -1.0
2,445,166 - Dsui_2290 0.30 -2.7
2,445,189 + +0.6
2,445,197 - Dsui_2290 0.34 -0.4
2,445,221 + -0.4
2,445,287 - Dsui_2290 0.48 -1.0
2,445,323 - Dsui_2290 0.53 -1.0
2,445,356 - -0.4
2,445,829 - Dsui_2291 0.31 +0.6
2,445,923 - Dsui_2291 0.46 -0.4
2,445,975 + -0.4
2,446,076 + +0.6
2,446,077 - +0.6
2,446,094 + Dsui_2291 0.73 +0.6
2,446,158 - Dsui_2291 0.83 +0.6
2,446,158 - Dsui_2291 0.83 -0.4
2,446,158 - +0.6
2,446,296 - -1.7
2,446,518 + +0.6
2,446,584 - -1.0
2,446,739 + +0.6
2,446,870 + +0.6
2,446,879 - +0.6
2,446,971 - +0.6
2,447,024 + Dsui_2293 0.18 -1.0
2,447,025 - +0.6
2,447,182 + +0.6

Or see this region's nucleotide sequence