Strain Fitness in Dechlorosoma suillum PS around Dsui_2184

Experiment: ALP with Zinc 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2183 and Dsui_2184 are separated by 114 nucleotidesDsui_2184 and Dsui_2185 are separated by 71 nucleotidesDsui_2185 and Dsui_2186 are separated by 185 nucleotides Dsui_2183: Dsui_2183 - aldose 1-epimerase-like enzyme, at 2,318,747 to 2,319,619 _2183 Dsui_2184: Dsui_2184 - hypothetical protein, at 2,319,734 to 2,320,282 _2184 Dsui_2185: Dsui_2185 - DNA-3-methyladenine glycosylase I, at 2,320,354 to 2,320,926 _2185 Dsui_2186: Dsui_2186 - Protein of unknown function (DUF3567), at 2,321,112 to 2,321,345 _2186 Position (kb) 2319 2320 2321Strain fitness (log2 ratio) -2 -1 0 1 2at 2318.768 kb on + strandat 2318.823 kb on + strandat 2318.948 kb on + strandat 2319.343 kb on + strandat 2319.369 kb on - strand, within Dsui_2183at 2319.402 kb on - strand, within Dsui_2183at 2319.564 kb on - strandat 2319.874 kb on + strandat 2319.977 kb on + strand, within Dsui_2184at 2320.260 kb on - strandat 2320.299 kb on - strandat 2320.402 kb on + strandat 2320.425 kb on + strand, within Dsui_2185at 2320.477 kb on - strandat 2320.619 kb on - strand, within Dsui_2185at 2320.650 kb on + strandat 2320.697 kb on + strandat 2320.784 kb on + strand, within Dsui_2185at 2320.901 kb on - strandat 2320.978 kb on + strandat 2321.011 kb on + strandat 2321.018 kb on - strandat 2321.045 kb on - strandat 2321.155 kb on + strand, within Dsui_2186

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
remove
2,318,768 + -0.8
2,318,823 + +0.8
2,318,948 + -1.5
2,319,343 + +0.8
2,319,369 - Dsui_2183 0.71 +0.2
2,319,402 - Dsui_2183 0.75 -0.7
2,319,564 - +1.8
2,319,874 + -0.2
2,319,977 + Dsui_2184 0.44 -2.0
2,320,260 - -0.2
2,320,299 - -1.8
2,320,402 + +0.8
2,320,425 + Dsui_2185 0.12 -0.2
2,320,477 - -0.2
2,320,619 - Dsui_2185 0.46 -0.8
2,320,650 + -0.2
2,320,697 + -0.2
2,320,784 + Dsui_2185 0.75 -0.2
2,320,901 - -0.8
2,320,978 + -0.2
2,321,011 + +0.8
2,321,018 - -0.2
2,321,045 - +0.8
2,321,155 + Dsui_2186 0.18 -0.4

Or see this region's nucleotide sequence