Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2162 and Dsui_2163 are separated by 282 nucleotides Dsui_2163 and Dsui_2164 are separated by 146 nucleotides Dsui_2164 and Dsui_2165 are separated by 264 nucleotides Dsui_2165 and Dsui_2166 overlap by 14 nucleotides
Dsui_2162: Dsui_2162 - hypothetical protein, at 2,297,499 to 2,298,074
_2162
Dsui_2163: Dsui_2163 - putative Fe-S oxidoreductase, at 2,298,357 to 2,298,773
_2163
Dsui_2164: Dsui_2164 - signal transduction histidine kinase, at 2,298,920 to 2,300,968
_2164
Dsui_2165: Dsui_2165 - RNA polymerase sigma factor, sigma-70 family, at 2,301,233 to 2,301,748
_2165
Dsui_2166: Dsui_2166 - Fe2+-dicitrate sensor, membrane component, at 2,301,735 to 2,302,670
_2166
Position (kb)
2298
2299
2300
2301 Strain fitness (log2 ratio)
-2
-1
0
1 at 2297.975 kb on - strand at 2298.093 kb on + strand at 2298.144 kb on + strand at 2298.144 kb on + strand at 2298.147 kb on - strand at 2298.147 kb on - strand at 2298.151 kb on + strand at 2298.206 kb on + strand at 2298.342 kb on + strand at 2298.360 kb on + strand at 2298.488 kb on - strand, within Dsui_2163 at 2298.494 kb on + strand, within Dsui_2163 at 2298.524 kb on - strand at 2298.716 kb on + strand, within Dsui_2163 at 2298.771 kb on - strand at 2298.819 kb on - strand at 2298.964 kb on + strand at 2299.084 kb on - strand at 2299.200 kb on - strand at 2299.217 kb on + strand at 2299.280 kb on - strand at 2299.282 kb on + strand at 2299.282 kb on + strand, within Dsui_2164 at 2299.290 kb on - strand at 2299.488 kb on + strand at 2299.657 kb on + strand at 2299.665 kb on - strand, within Dsui_2164 at 2299.708 kb on - strand, within Dsui_2164 at 2299.780 kb on - strand at 2299.825 kb on - strand at 2300.068 kb on + strand at 2300.076 kb on - strand, within Dsui_2164 at 2300.144 kb on - strand at 2300.144 kb on - strand at 2300.299 kb on - strand, within Dsui_2164 at 2300.308 kb on + strand at 2300.316 kb on - strand at 2300.354 kb on - strand at 2300.498 kb on - strand, within Dsui_2164 at 2300.679 kb on - strand at 2300.781 kb on - strand at 2300.866 kb on + strand at 2300.890 kb on - strand at 2301.188 kb on - strand at 2301.429 kb on - strand at 2301.447 kb on + strand, within Dsui_2165 at 2301.502 kb on - strand at 2301.520 kb on + strand, within Dsui_2165 at 2301.616 kb on + strand, within Dsui_2165 at 2301.906 kb on + strand, within Dsui_2166 at 2301.931 kb on + strand, within Dsui_2166 at 2301.939 kb on - strand at 2301.939 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 2,297,975 - +0.8 2,298,093 + +0.8 2,298,144 + +0.8 2,298,144 + -0.2 2,298,147 - -1.8 2,298,147 - +0.8 2,298,151 + +0.8 2,298,206 + +0.8 2,298,342 + +0.8 2,298,360 + -0.2 2,298,488 - Dsui_2163 0.31 -0.2 2,298,494 + Dsui_2163 0.33 -0.8 2,298,524 - -0.8 2,298,716 + Dsui_2163 0.86 +0.8 2,298,771 - +0.8 2,298,819 - +0.8 2,298,964 + -1.2 2,299,084 - -1.6 2,299,200 - -0.2 2,299,217 + +0.8 2,299,280 - +0.8 2,299,282 + +0.8 2,299,282 + Dsui_2164 0.18 +0.8 2,299,290 - -0.8 2,299,488 + +0.8 2,299,657 + +0.8 2,299,665 - Dsui_2164 0.36 -1.2 2,299,708 - Dsui_2164 0.38 -0.9 2,299,780 - +0.8 2,299,825 - -0.2 2,300,068 + -0.2 2,300,076 - Dsui_2164 0.56 -2.2 2,300,144 - -0.2 2,300,144 - +0.8 2,300,299 - Dsui_2164 0.67 -0.2 2,300,308 + +0.8 2,300,316 - -0.2 2,300,354 - +0.8 2,300,498 - Dsui_2164 0.77 -1.8 2,300,679 - +0.8 2,300,781 - -1.2 2,300,866 + +0.8 2,300,890 - +0.8 2,301,188 - +0.8 2,301,429 - +0.8 2,301,447 + Dsui_2165 0.41 +0.8 2,301,502 - -0.2 2,301,520 + Dsui_2165 0.56 +0.8 2,301,616 + Dsui_2165 0.74 -1.2 2,301,906 + Dsui_2166 0.18 -0.8 2,301,931 + Dsui_2166 0.21 -1.5 2,301,939 - -0.8 2,301,939 - +0.8
Or see this region's nucleotide sequence