Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2157 and Dsui_2158 overlap by 20 nucleotides Dsui_2158 and Dsui_2159 are separated by 237 nucleotides
Dsui_2157: Dsui_2157 - PAS domain S-box, at 2,288,246 to 2,290,624
_2157
Dsui_2158: Dsui_2158 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,290,605 to 2,291,252
_2158
Dsui_2159: Dsui_2159 - methyl-accepting chemotaxis protein, at 2,291,490 to 2,292,758
_2159
Position (kb)
2290
2291
2292 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2289.809 kb on + strand, within Dsui_2157 at 2289.939 kb on + strand, within Dsui_2157 at 2289.979 kb on + strand, within Dsui_2157 at 2290.039 kb on - strand at 2290.072 kb on - strand, within Dsui_2157 at 2290.397 kb on + strand at 2290.582 kb on + strand at 2290.587 kb on + strand at 2290.587 kb on + strand at 2290.653 kb on + strand at 2290.697 kb on + strand, within Dsui_2158 at 2290.761 kb on + strand, within Dsui_2158 at 2290.770 kb on - strand at 2291.110 kb on + strand at 2291.332 kb on - strand at 2291.434 kb on + strand at 2291.613 kb on + strand at 2291.656 kb on + strand, within Dsui_2159 at 2291.670 kb on - strand, within Dsui_2159 at 2291.673 kb on + strand, within Dsui_2159 at 2291.673 kb on + strand, within Dsui_2159 at 2291.709 kb on + strand, within Dsui_2159 at 2291.760 kb on - strand, within Dsui_2159 at 2291.804 kb on - strand at 2291.819 kb on + strand, within Dsui_2159 at 2291.909 kb on + strand, within Dsui_2159 at 2291.914 kb on + strand, within Dsui_2159 at 2291.914 kb on + strand, within Dsui_2159 at 2291.956 kb on - strand at 2292.024 kb on + strand at 2292.024 kb on + strand, within Dsui_2159 at 2292.024 kb on + strand, within Dsui_2159 at 2292.037 kb on - strand at 2292.039 kb on + strand, within Dsui_2159
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 2,289,809 + Dsui_2157 0.66 +0.8 2,289,939 + Dsui_2157 0.71 -2.4 2,289,979 + Dsui_2157 0.73 +0.8 2,290,039 - +0.8 2,290,072 - Dsui_2157 0.77 -0.2 2,290,397 + -1.6 2,290,582 + -1.5 2,290,587 + +0.8 2,290,587 + -0.2 2,290,653 + -0.8 2,290,697 + Dsui_2158 0.14 -1.6 2,290,761 + Dsui_2158 0.24 -0.2 2,290,770 - -0.2 2,291,110 + +0.8 2,291,332 - -2.2 2,291,434 + +0.4 2,291,613 + +0.2 2,291,656 + Dsui_2159 0.13 +0.2 2,291,670 - Dsui_2159 0.14 -0.2 2,291,673 + Dsui_2159 0.14 +0.3 2,291,673 + Dsui_2159 0.14 +0.5 2,291,709 + Dsui_2159 0.17 -0.2 2,291,760 - Dsui_2159 0.21 +0.8 2,291,804 - +0.8 2,291,819 + Dsui_2159 0.26 -0.2 2,291,909 + Dsui_2159 0.33 +0.3 2,291,914 + Dsui_2159 0.33 +0.0 2,291,914 + Dsui_2159 0.33 -0.6 2,291,956 - -0.8 2,292,024 + +2.6 2,292,024 + Dsui_2159 0.42 +0.1 2,292,024 + Dsui_2159 0.42 -0.7 2,292,037 - -0.8 2,292,039 + Dsui_2159 0.43 -0.2
Or see this region's nucleotide sequence