Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2043 and Dsui_2044 are separated by 262 nucleotides Dsui_2044 and Dsui_2045 are separated by 150 nucleotides Dsui_2045 and Dsui_2046 are separated by 40 nucleotides
Dsui_2043: Dsui_2043 - cysteine synthase, at 2,162,119 to 2,163,624
_2043
Dsui_2044: Dsui_2044 - Rhodanese-related sulfurtransferase, at 2,163,887 to 2,164,660
_2044
Dsui_2045: Dsui_2045 - hypothetical protein, at 2,164,811 to 2,165,128
_2045
Dsui_2046: Dsui_2046 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,165,169 to 2,166,848
_2046
Position (kb)
2163
2164
2165 Strain fitness (log2 ratio)
-2
-1
0
1 at 2163.094 kb on + strand at 2163.146 kb on - strand, within Dsui_2043 at 2163.206 kb on - strand at 2163.228 kb on + strand at 2163.249 kb on + strand at 2163.253 kb on - strand, within Dsui_2043 at 2163.305 kb on - strand at 2163.430 kb on - strand, within Dsui_2043 at 2163.463 kb on - strand, within Dsui_2043 at 2163.473 kb on - strand, within Dsui_2043 at 2163.628 kb on + strand at 2163.628 kb on + strand at 2163.646 kb on + strand at 2163.647 kb on + strand at 2163.647 kb on + strand at 2163.647 kb on + strand at 2163.655 kb on - strand at 2163.845 kb on + strand at 2163.845 kb on + strand at 2163.853 kb on - strand at 2163.973 kb on + strand, within Dsui_2044 at 2164.025 kb on - strand, within Dsui_2044 at 2164.072 kb on - strand at 2164.075 kb on + strand, within Dsui_2044 at 2164.089 kb on + strand at 2164.114 kb on - strand at 2164.174 kb on + strand, within Dsui_2044 at 2164.259 kb on - strand at 2164.409 kb on + strand, within Dsui_2044 at 2164.761 kb on + strand at 2164.791 kb on + strand at 2164.796 kb on + strand at 2164.796 kb on + strand at 2164.796 kb on + strand at 2164.796 kb on + strand at 2164.796 kb on + strand at 2164.804 kb on - strand at 2164.869 kb on + strand at 2164.893 kb on - strand at 2164.950 kb on + strand, within Dsui_2045 at 2165.021 kb on + strand, within Dsui_2045 at 2165.047 kb on - strand, within Dsui_2045 at 2165.066 kb on + strand, within Dsui_2045 at 2165.076 kb on + strand, within Dsui_2045 at 2165.265 kb on + strand at 2165.317 kb on + strand at 2165.382 kb on + strand, within Dsui_2046 at 2165.590 kb on + strand at 2165.638 kb on - strand at 2165.640 kb on + strand at 2165.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 2,163,094 + +0.8 2,163,146 - Dsui_2043 0.68 -2.0 2,163,206 - +0.8 2,163,228 + +0.8 2,163,249 + +0.8 2,163,253 - Dsui_2043 0.75 -0.2 2,163,305 - +0.8 2,163,430 - Dsui_2043 0.87 -0.2 2,163,463 - Dsui_2043 0.89 -1.2 2,163,473 - Dsui_2043 0.90 -0.7 2,163,628 + +0.8 2,163,628 + +0.8 2,163,646 + +0.8 2,163,647 + -0.7 2,163,647 + +0.8 2,163,647 + -1.5 2,163,655 - +0.8 2,163,845 + +0.8 2,163,845 + +0.8 2,163,853 - -0.2 2,163,973 + Dsui_2044 0.11 +0.8 2,164,025 - Dsui_2044 0.18 -0.2 2,164,072 - -0.2 2,164,075 + Dsui_2044 0.24 -0.2 2,164,089 + +0.8 2,164,114 - -0.2 2,164,174 + Dsui_2044 0.37 +1.6 2,164,259 - +0.8 2,164,409 + Dsui_2044 0.67 -0.2 2,164,761 + +0.8 2,164,791 + -0.7 2,164,796 + -1.2 2,164,796 + -0.7 2,164,796 + +0.8 2,164,796 + +0.8 2,164,796 + -0.2 2,164,804 - +0.8 2,164,869 + +0.8 2,164,893 - +0.8 2,164,950 + Dsui_2045 0.44 -2.0 2,165,021 + Dsui_2045 0.66 -1.5 2,165,047 - Dsui_2045 0.74 -0.2 2,165,066 + Dsui_2045 0.80 +0.8 2,165,076 + Dsui_2045 0.83 -0.2 2,165,265 + -0.2 2,165,317 + -0.2 2,165,382 + Dsui_2046 0.13 +0.8 2,165,590 + +0.8 2,165,638 - +0.8 2,165,640 + +0.8 2,165,648 - +0.8
Or see this region's nucleotide sequence