Strain Fitness in Dechlorosoma suillum PS around Dsui_2006

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2004 and Dsui_2005 overlap by 4 nucleotidesDsui_2005 and Dsui_2006 are separated by 13 nucleotidesDsui_2006 and Dsui_2007 are separated by 43 nucleotidesDsui_2007 and Dsui_2008 are separated by 21 nucleotides Dsui_2004: Dsui_2004 - putative signal-transduction protein containing cAMP-binding and CBS domains, at 2,112,211 to 2,114,121 _2004 Dsui_2005: Dsui_2005 - DNA polymerase III epsilon subunit-like 3'-5' exonuclease, at 2,114,118 to 2,114,831 _2005 Dsui_2006: Dsui_2006 - putative sodium:solute symporter, VC_2705 subfamily, at 2,114,845 to 2,116,887 _2006 Dsui_2007: Dsui_2007 - putative solute:sodium symporter small subunit, at 2,116,931 to 2,117,197 _2007 Dsui_2008: Dsui_2008 - tetratricopeptide repeat protein, at 2,117,219 to 2,117,806 _2008 Position (kb) 2114 2115 2116 2117Strain fitness (log2 ratio) -3 -2 -1 0 1at 2113.870 kb on + strand, within Dsui_2004at 2114.029 kb on - strandat 2114.246 kb on - strandat 2114.262 kb on + strandat 2114.443 kb on + strand, within Dsui_2005at 2114.455 kb on + strand, within Dsui_2005at 2114.536 kb on - strand, within Dsui_2005at 2114.584 kb on + strand, within Dsui_2005at 2114.594 kb on + strand, within Dsui_2005at 2114.613 kb on - strand, within Dsui_2005at 2114.613 kb on - strandat 2114.698 kb on - strand, within Dsui_2005at 2114.892 kb on + strandat 2114.934 kb on - strandat 2114.942 kb on + strandat 2115.081 kb on + strand, within Dsui_2006at 2115.146 kb on - strand, within Dsui_2006at 2115.164 kb on + strandat 2115.549 kb on + strand, within Dsui_2006at 2115.577 kb on + strandat 2115.680 kb on - strandat 2115.903 kb on + strand, within Dsui_2006at 2115.973 kb on - strand, within Dsui_2006at 2116.020 kb on + strand, within Dsui_2006at 2116.057 kb on + strand, within Dsui_2006at 2116.107 kb on + strand, within Dsui_2006at 2116.128 kb on + strand, within Dsui_2006at 2116.139 kb on + strand, within Dsui_2006at 2116.152 kb on - strandat 2116.189 kb on + strand, within Dsui_2006at 2116.362 kb on + strand, within Dsui_2006at 2116.370 kb on - strand, within Dsui_2006at 2116.440 kb on + strand, within Dsui_2006at 2116.447 kb on + strand, within Dsui_2006at 2116.459 kb on - strand, within Dsui_2006at 2116.596 kb on - strandat 2116.601 kb on - strandat 2116.709 kb on + strandat 2116.717 kb on - strandat 2116.835 kb on + strandat 2116.853 kb on + strandat 2116.889 kb on + strandat 2116.921 kb on + strandat 2116.921 kb on + strandat 2116.921 kb on + strandat 2116.924 kb on - strandat 2116.929 kb on - strandat 2116.929 kb on - strandat 2117.024 kb on - strand, within Dsui_2007at 2117.067 kb on + strand, within Dsui_2007at 2117.072 kb on + strand, within Dsui_2007at 2117.072 kb on + strand, within Dsui_2007at 2117.164 kb on + strand, within Dsui_2007at 2117.304 kb on - strandat 2117.349 kb on + strand, within Dsui_2008at 2117.462 kb on + strand, within Dsui_2008at 2117.486 kb on - strand, within Dsui_2008at 2117.502 kb on - strand, within Dsui_2008at 2117.517 kb on + strand, within Dsui_2008at 2117.641 kb on + strand, within Dsui_2008at 2117.648 kb on - strand, within Dsui_2008at 2117.695 kb on + strandat 2117.703 kb on - strand, within Dsui_2008at 2117.715 kb on + strand, within Dsui_2008at 2117.730 kb on + strand, within Dsui_2008at 2117.774 kb on + strandat 2117.826 kb on - strandat 2117.828 kb on + strandat 2117.836 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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2,113,870 + Dsui_2004 0.87 -0.7
2,114,029 - +0.9
2,114,246 - -0.1
2,114,262 + +0.9
2,114,443 + Dsui_2005 0.46 -0.1
2,114,455 + Dsui_2005 0.47 +0.9
2,114,536 - Dsui_2005 0.59 +0.9
2,114,584 + Dsui_2005 0.65 -3.2
2,114,594 + Dsui_2005 0.67 +0.9
2,114,613 - Dsui_2005 0.69 -1.1
2,114,613 - +0.9
2,114,698 - Dsui_2005 0.81 -0.1
2,114,892 + -0.1
2,114,934 - -0.7
2,114,942 + -0.1
2,115,081 + Dsui_2006 0.12 -0.7
2,115,146 - Dsui_2006 0.15 -1.9
2,115,164 + +0.9
2,115,549 + Dsui_2006 0.34 -0.2
2,115,577 + +0.8
2,115,680 - +0.8
2,115,903 + Dsui_2006 0.52 +0.8
2,115,973 - Dsui_2006 0.55 -0.2
2,116,020 + Dsui_2006 0.58 -1.2
2,116,057 + Dsui_2006 0.59 -0.7
2,116,107 + Dsui_2006 0.62 +0.8
2,116,128 + Dsui_2006 0.63 +0.8
2,116,139 + Dsui_2006 0.63 +0.8
2,116,152 - -0.2
2,116,189 + Dsui_2006 0.66 -1.5
2,116,362 + Dsui_2006 0.74 +0.8
2,116,370 - Dsui_2006 0.75 -1.5
2,116,440 + Dsui_2006 0.78 -1.2
2,116,447 + Dsui_2006 0.78 +0.8
2,116,459 - Dsui_2006 0.79 -0.2
2,116,596 - +0.9
2,116,601 - +0.9
2,116,709 + +0.9
2,116,717 - +0.9
2,116,835 + -0.7
2,116,853 + +0.9
2,116,889 + +0.9
2,116,921 + +0.9
2,116,921 + +0.9
2,116,921 + +0.9
2,116,924 - +0.9
2,116,929 - -1.9
2,116,929 - +0.9
2,117,024 - Dsui_2007 0.35 +0.9
2,117,067 + Dsui_2007 0.51 +0.9
2,117,072 + Dsui_2007 0.53 -0.1
2,117,072 + Dsui_2007 0.53 -0.1
2,117,164 + Dsui_2007 0.87 +0.9
2,117,304 - -0.2
2,117,349 + Dsui_2008 0.22 -1.2
2,117,462 + Dsui_2008 0.41 -1.7
2,117,486 - Dsui_2008 0.45 -0.2
2,117,502 - Dsui_2008 0.48 +0.8
2,117,517 + Dsui_2008 0.51 +0.8
2,117,641 + Dsui_2008 0.72 -0.2
2,117,648 - Dsui_2008 0.73 -0.2
2,117,695 + -0.2
2,117,703 - Dsui_2008 0.82 -0.2
2,117,715 + Dsui_2008 0.84 -0.7
2,117,730 + Dsui_2008 0.87 +0.8
2,117,774 + -0.2
2,117,826 - -1.2
2,117,828 + -0.7
2,117,836 - -0.2

Or see this region's nucleotide sequence