Strain Fitness in Dechlorosoma suillum PS around Dsui_1987

Experiment: ALP with Zinc 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1986 and Dsui_1987 are separated by 24 nucleotidesDsui_1987 and Dsui_1988 are separated by 105 nucleotides Dsui_1986: Dsui_1986 - sulfite reductase, beta subunit (hemoprotein), at 2,094,974 to 2,096,650 _1986 Dsui_1987: Dsui_1987 - putative permease, at 2,096,675 to 2,097,448 _1987 Dsui_1988: Dsui_1988 - transcriptional regulator, at 2,097,554 to 2,098,528 _1988 Position (kb) 2096 2097 2098Strain fitness (log2 ratio) -1 0 1at 2096.707 kb on - strandat 2096.785 kb on + strandat 2096.785 kb on + strandat 2096.871 kb on - strand, within Dsui_1987at 2096.925 kb on - strand, within Dsui_1987at 2096.925 kb on - strand, within Dsui_1987at 2096.997 kb on - strand, within Dsui_1987at 2096.997 kb on - strand, within Dsui_1987at 2097.003 kb on - strand, within Dsui_1987at 2097.063 kb on + strandat 2097.063 kb on + strandat 2097.069 kb on - strand, within Dsui_1987at 2097.071 kb on - strand, within Dsui_1987at 2097.191 kb on - strand, within Dsui_1987at 2097.192 kb on - strand, within Dsui_1987at 2097.276 kb on - strand, within Dsui_1987at 2097.308 kb on - strand, within Dsui_1987at 2097.325 kb on - strand, within Dsui_1987at 2097.441 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
remove
2,096,707 - +0.2
2,096,785 + +0.9
2,096,785 + +0.9
2,096,871 - Dsui_1987 0.25 +0.5
2,096,925 - Dsui_1987 0.32 +0.4
2,096,925 - Dsui_1987 0.32 -0.0
2,096,997 - Dsui_1987 0.42 +0.0
2,096,997 - Dsui_1987 0.42 +0.4
2,097,003 - Dsui_1987 0.42 +0.2
2,097,063 + -0.7
2,097,063 + +0.9
2,097,069 - Dsui_1987 0.51 +0.2
2,097,071 - Dsui_1987 0.51 +0.5
2,097,191 - Dsui_1987 0.67 +0.4
2,097,192 - Dsui_1987 0.67 +0.5
2,097,276 - Dsui_1987 0.78 +0.1
2,097,308 - Dsui_1987 0.82 +0.0
2,097,325 - Dsui_1987 0.84 +0.5
2,097,441 - +0.4

Or see this region's nucleotide sequence