Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1933 and Dsui_1934 overlap by 8 nucleotides Dsui_1934 and Dsui_1935 are separated by 79 nucleotides Dsui_1935 and Dsui_1936 are separated by 82 nucleotides
Dsui_1933: Dsui_1933 - 2-phosphoglycolate phosphatase, at 2,042,979 to 2,043,638
_1933
Dsui_1934: Dsui_1934 - ubiquinone biosynthesis O-methyltransferase, at 2,043,631 to 2,044,329
_1934
Dsui_1935: Dsui_1935 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 2,044,409 to 2,045,047
_1935
Dsui_1936: Dsui_1936 - cytosine deaminase-like metal-dependent hydrolase, at 2,045,130 to 2,046,464
_1936
Position (kb)
2044
2045
2046 Strain fitness (log2 ratio)
-2
-1
0
1 at 2043.419 kb on - strand, within Dsui_1933 at 2043.444 kb on + strand, within Dsui_1933 at 2043.504 kb on + strand, within Dsui_1933 at 2043.505 kb on + strand, within Dsui_1933 at 2043.520 kb on - strand, within Dsui_1933 at 2043.522 kb on + strand, within Dsui_1933 at 2043.530 kb on - strand, within Dsui_1933 at 2043.572 kb on - strand, within Dsui_1933 at 2043.574 kb on + strand at 2043.618 kb on + strand at 2043.647 kb on + strand at 2043.647 kb on + strand at 2044.348 kb on - strand at 2044.355 kb on - strand at 2044.370 kb on - strand at 2045.060 kb on - strand at 2045.196 kb on - strand at 2045.204 kb on - strand at 2045.230 kb on + strand at 2045.230 kb on + strand at 2045.238 kb on - strand at 2045.238 kb on - strand at 2045.257 kb on - strand at 2045.293 kb on - strand, within Dsui_1936 at 2045.326 kb on + strand, within Dsui_1936 at 2045.410 kb on - strand, within Dsui_1936 at 2045.435 kb on + strand, within Dsui_1936 at 2045.439 kb on - strand, within Dsui_1936 at 2045.576 kb on + strand at 2045.614 kb on - strand, within Dsui_1936 at 2045.616 kb on - strand, within Dsui_1936 at 2045.626 kb on - strand, within Dsui_1936 at 2045.634 kb on - strand, within Dsui_1936 at 2045.701 kb on - strand, within Dsui_1936 at 2045.708 kb on + strand, within Dsui_1936 at 2045.798 kb on - strand, within Dsui_1936 at 2045.852 kb on - strand, within Dsui_1936 at 2045.882 kb on + strand, within Dsui_1936 at 2045.889 kb on + strand, within Dsui_1936 at 2045.890 kb on - strand, within Dsui_1936 at 2045.923 kb on - strand, within Dsui_1936 at 2045.994 kb on + strand at 2046.002 kb on - strand, within Dsui_1936 at 2046.002 kb on - strand, within Dsui_1936
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 2,043,419 - Dsui_1933 0.67 -0.4 2,043,444 + Dsui_1933 0.70 -1.1 2,043,504 + Dsui_1933 0.80 -1.5 2,043,505 + Dsui_1933 0.80 -1.1 2,043,520 - Dsui_1933 0.82 -0.4 2,043,522 + Dsui_1933 0.82 -0.7 2,043,530 - Dsui_1933 0.83 -0.5 2,043,572 - Dsui_1933 0.90 +0.2 2,043,574 + +0.9 2,043,618 + -0.1 2,043,647 + -1.1 2,043,647 + +0.5 2,044,348 - +0.2 2,044,355 - +0.4 2,044,370 - +0.5 2,045,060 - -2.6 2,045,196 - -0.4 2,045,204 - -0.4 2,045,230 + +0.9 2,045,230 + -0.7 2,045,238 - -0.6 2,045,238 - -0.4 2,045,257 - -0.3 2,045,293 - Dsui_1936 0.12 +0.6 2,045,326 + Dsui_1936 0.15 +0.9 2,045,410 - Dsui_1936 0.21 +0.9 2,045,435 + Dsui_1936 0.23 +0.9 2,045,439 - Dsui_1936 0.23 -1.7 2,045,576 + +0.9 2,045,614 - Dsui_1936 0.36 +0.9 2,045,616 - Dsui_1936 0.36 -0.7 2,045,626 - Dsui_1936 0.37 -0.7 2,045,634 - Dsui_1936 0.38 +0.9 2,045,701 - Dsui_1936 0.43 +0.9 2,045,708 + Dsui_1936 0.43 -1.4 2,045,798 - Dsui_1936 0.50 -0.1 2,045,852 - Dsui_1936 0.54 +0.9 2,045,882 + Dsui_1936 0.56 -1.4 2,045,889 + Dsui_1936 0.57 -0.1 2,045,890 - Dsui_1936 0.57 +0.9 2,045,923 - Dsui_1936 0.59 +0.9 2,045,994 + +0.9 2,046,002 - Dsui_1936 0.65 -1.4 2,046,002 - Dsui_1936 0.65 +0.9
Or see this region's nucleotide sequence