Strain Fitness in Dechlorosoma suillum PS around Dsui_1923

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1922 and Dsui_1923 are separated by 609 nucleotidesDsui_1923 and Dsui_1924 overlap by 4 nucleotides Dsui_1922: Dsui_1922 - outer membrane receptor for ferrienterochelin and colicins, at 2,027,127 to 2,029,406 _1922 Dsui_1923: Dsui_1923 - ribonucleotide reductase, beta subunit, at 2,030,016 to 2,031,200 _1923 Dsui_1924: Dsui_1924 - ribonucleoside-diphosphate reductase, alpha subunit, at 2,031,197 to 2,034,043 _1924 Position (kb) 2030 2031 2032Strain fitness (log2 ratio) -1 0 1at 2029.046 kb on + strand, within Dsui_1922at 2029.296 kb on + strandat 2029.296 kb on + strandat 2029.296 kb on + strandat 2029.339 kb on - strandat 2029.674 kb on - strandat 2029.708 kb on + strandat 2029.764 kb on - strandat 2029.845 kb on + strandat 2029.853 kb on - strandat 2029.853 kb on - strandat 2030.014 kb on + strandat 2030.097 kb on - strandat 2030.115 kb on - strandat 2030.274 kb on - strand, within Dsui_1923at 2030.287 kb on + strand, within Dsui_1923at 2030.287 kb on + strand, within Dsui_1923at 2030.311 kb on - strand, within Dsui_1923at 2030.359 kb on + strandat 2030.364 kb on + strand, within Dsui_1923at 2030.364 kb on + strandat 2030.372 kb on - strand, within Dsui_1923at 2030.372 kb on - strand, within Dsui_1923at 2030.435 kb on + strand, within Dsui_1923at 2030.496 kb on - strand, within Dsui_1923at 2030.588 kb on - strand, within Dsui_1923at 2030.623 kb on - strand, within Dsui_1923at 2030.656 kb on - strand, within Dsui_1923at 2030.704 kb on - strand, within Dsui_1923at 2030.802 kb on - strand, within Dsui_1923at 2030.935 kb on + strandat 2030.943 kb on - strand, within Dsui_1923at 2030.987 kb on - strand, within Dsui_1923at 2031.022 kb on - strand, within Dsui_1923at 2031.322 kb on + strandat 2031.330 kb on - strandat 2031.333 kb on + strandat 2031.426 kb on - strandat 2031.475 kb on - strandat 2031.521 kb on - strand, within Dsui_1924at 2031.586 kb on + strand, within Dsui_1924at 2031.586 kb on + strand, within Dsui_1924at 2031.587 kb on - strand, within Dsui_1924at 2031.594 kb on - strand, within Dsui_1924at 2031.594 kb on - strand, within Dsui_1924at 2031.628 kb on - strand, within Dsui_1924at 2031.802 kb on - strand, within Dsui_1924at 2031.858 kb on + strand, within Dsui_1924at 2032.021 kb on - strand, within Dsui_1924at 2032.096 kb on + strandat 2032.104 kb on - strand, within Dsui_1924at 2032.104 kb on - strand, within Dsui_1924at 2032.141 kb on - strand, within Dsui_1924

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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2,029,046 + Dsui_1922 0.84 -0.2
2,029,296 + +0.8
2,029,296 + -0.2
2,029,296 + +0.8
2,029,339 - +0.8
2,029,674 - +0.5
2,029,708 + -0.7
2,029,764 - +0.4
2,029,845 + -0.2
2,029,853 - +0.4
2,029,853 - +0.4
2,030,014 + +0.8
2,030,097 - +0.1
2,030,115 - +0.1
2,030,274 - Dsui_1923 0.22 +0.4
2,030,287 + Dsui_1923 0.23 -1.2
2,030,287 + Dsui_1923 0.23 +0.8
2,030,311 - Dsui_1923 0.25 +0.1
2,030,359 + -0.2
2,030,364 + Dsui_1923 0.29 +0.8
2,030,364 + +0.8
2,030,372 - Dsui_1923 0.30 +0.6
2,030,372 - Dsui_1923 0.30 +0.2
2,030,435 + Dsui_1923 0.35 -0.2
2,030,496 - Dsui_1923 0.41 +0.0
2,030,588 - Dsui_1923 0.48 +0.2
2,030,623 - Dsui_1923 0.51 +0.2
2,030,656 - Dsui_1923 0.54 +0.2
2,030,704 - Dsui_1923 0.58 +0.4
2,030,802 - Dsui_1923 0.66 -0.0
2,030,935 + +1.3
2,030,943 - Dsui_1923 0.78 -0.1
2,030,987 - Dsui_1923 0.82 +0.5
2,031,022 - Dsui_1923 0.85 +0.2
2,031,322 + -1.2
2,031,330 - +0.0
2,031,333 + -0.7
2,031,426 - +0.3
2,031,475 - +0.4
2,031,521 - Dsui_1924 0.11 +0.4
2,031,586 + Dsui_1924 0.14 -0.7
2,031,586 + Dsui_1924 0.14 +0.8
2,031,587 - Dsui_1924 0.14 +0.6
2,031,594 - Dsui_1924 0.14 +0.7
2,031,594 - Dsui_1924 0.14 -0.0
2,031,628 - Dsui_1924 0.15 +0.3
2,031,802 - Dsui_1924 0.21 +0.4
2,031,858 + Dsui_1924 0.23 +0.8
2,032,021 - Dsui_1924 0.29 +0.2
2,032,096 + -0.7
2,032,104 - Dsui_1924 0.32 +0.1
2,032,104 - Dsui_1924 0.32 +0.3
2,032,141 - Dsui_1924 0.33 -0.0

Or see this region's nucleotide sequence