Strain Fitness in Dechlorosoma suillum PS around Dsui_1905

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1904 and Dsui_1905 are separated by 158 nucleotidesDsui_1905 and Dsui_1906 are separated by 261 nucleotides Dsui_1904: Dsui_1904 - aspartate/tyrosine/aromatic aminotransferase, at 2,005,365 to 2,006,561 _1904 Dsui_1905: Dsui_1905 - PAS domain S-box, at 2,006,720 to 2,009,239 _1905 Dsui_1906: Dsui_1906 - uncharacterized membrane protein, possible Na+ channel or pump, at 2,009,501 to 2,010,217 _1906 Position (kb) 2006 2007 2008 2009 2010Strain fitness (log2 ratio) -2 -1 0 1at 2005.758 kb on + strandat 2005.800 kb on - strand, within Dsui_1904at 2005.836 kb on - strand, within Dsui_1904at 2006.048 kb on + strand, within Dsui_1904at 2006.223 kb on - strand, within Dsui_1904at 2006.237 kb on + strand, within Dsui_1904at 2006.245 kb on - strand, within Dsui_1904at 2006.280 kb on - strand, within Dsui_1904at 2006.295 kb on - strand, within Dsui_1904at 2006.366 kb on + strand, within Dsui_1904at 2006.419 kb on + strandat 2006.424 kb on + strandat 2006.514 kb on - strandat 2006.524 kb on - strandat 2006.530 kb on - strandat 2006.731 kb on - strandat 2006.796 kb on + strandat 2006.917 kb on + strandat 2007.126 kb on + strand, within Dsui_1905at 2007.198 kb on - strandat 2007.348 kb on - strand, within Dsui_1905at 2007.457 kb on + strandat 2007.465 kb on - strand, within Dsui_1905at 2007.465 kb on - strandat 2007.465 kb on - strand, within Dsui_1905at 2007.694 kb on + strand, within Dsui_1905at 2007.702 kb on - strand, within Dsui_1905at 2007.864 kb on + strandat 2007.908 kb on - strandat 2007.908 kb on - strand, within Dsui_1905at 2008.075 kb on + strandat 2008.112 kb on + strand, within Dsui_1905at 2008.120 kb on - strandat 2008.120 kb on - strandat 2008.120 kb on - strand, within Dsui_1905at 2008.138 kb on - strand, within Dsui_1905at 2008.429 kb on + strandat 2008.448 kb on + strandat 2008.533 kb on + strandat 2008.617 kb on - strand, within Dsui_1905at 2008.639 kb on + strand, within Dsui_1905at 2008.647 kb on - strand, within Dsui_1905at 2008.752 kb on - strand, within Dsui_1905at 2008.754 kb on + strandat 2008.769 kb on - strand, within Dsui_1905at 2008.818 kb on + strandat 2008.886 kb on + strandat 2008.887 kb on + strandat 2008.893 kb on + strandat 2009.167 kb on + strandat 2009.258 kb on - strandat 2009.542 kb on - strandat 2009.549 kb on - strandat 2009.780 kb on - strandat 2009.788 kb on + strandat 2009.798 kb on + strandat 2009.822 kb on + strandat 2009.873 kb on - strandat 2009.965 kb on - strandat 2009.976 kb on + strandat 2009.977 kb on - strand, within Dsui_1906at 2010.065 kb on - strandat 2010.076 kb on + strand, within Dsui_1906at 2010.084 kb on - strand, within Dsui_1906at 2010.182 kb on + strandat 2010.195 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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2,005,758 + -0.8
2,005,800 - Dsui_1904 0.36 -0.8
2,005,836 - Dsui_1904 0.39 -1.4
2,006,048 + Dsui_1904 0.57 -1.2
2,006,223 - Dsui_1904 0.72 -0.9
2,006,237 + Dsui_1904 0.73 -1.8
2,006,245 - Dsui_1904 0.74 +0.8
2,006,280 - Dsui_1904 0.76 -0.6
2,006,295 - Dsui_1904 0.78 -0.1
2,006,366 + Dsui_1904 0.84 -0.2
2,006,419 + +0.8
2,006,424 + -0.2
2,006,514 - -0.3
2,006,524 - -0.4
2,006,530 - -0.8
2,006,731 - -0.2
2,006,796 + -1.8
2,006,917 + -0.8
2,007,126 + Dsui_1905 0.16 -0.8
2,007,198 - -0.2
2,007,348 - Dsui_1905 0.25 +0.8
2,007,457 + +0.8
2,007,465 - Dsui_1905 0.30 -0.8
2,007,465 - -0.2
2,007,465 - Dsui_1905 0.30 -0.2
2,007,694 + Dsui_1905 0.39 -0.2
2,007,702 - Dsui_1905 0.39 -1.5
2,007,864 + +0.8
2,007,908 - +0.8
2,007,908 - Dsui_1905 0.47 -0.8
2,008,075 + +0.8
2,008,112 + Dsui_1905 0.55 +0.8
2,008,120 - +0.8
2,008,120 - -0.2
2,008,120 - Dsui_1905 0.56 +0.8
2,008,138 - Dsui_1905 0.56 +0.8
2,008,429 + +0.8
2,008,448 + -0.8
2,008,533 + +0.8
2,008,617 - Dsui_1905 0.75 -2.0
2,008,639 + Dsui_1905 0.76 -0.2
2,008,647 - Dsui_1905 0.76 +0.8
2,008,752 - Dsui_1905 0.81 +0.8
2,008,754 + -0.2
2,008,769 - Dsui_1905 0.81 -2.5
2,008,818 + +0.8
2,008,886 + +0.8
2,008,887 + +0.8
2,008,893 + +0.8
2,009,167 + -0.8
2,009,258 - -0.2
2,009,542 - -0.2
2,009,549 - -0.2
2,009,780 - +0.8
2,009,788 + +0.8
2,009,798 + +0.8
2,009,822 + -0.2
2,009,873 - +0.8
2,009,965 - +0.8
2,009,976 + -0.2
2,009,977 - Dsui_1906 0.66 +0.8
2,010,065 - +0.8
2,010,076 + Dsui_1906 0.80 -1.2
2,010,084 - Dsui_1906 0.81 -1.8
2,010,182 + -0.2
2,010,195 + -0.2

Or see this region's nucleotide sequence