Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1896 and Dsui_1897 are separated by 1 nucleotides Dsui_1897 and Dsui_1898 overlap by 13 nucleotides Dsui_1898 and Dsui_1899 are separated by 192 nucleotides
Dsui_1896: Dsui_1896 - arabinose efflux permease family protein, at 1,995,967 to 1,997,220
_1896
Dsui_1897: Dsui_1897 - hypothetical protein, at 1,997,222 to 1,997,356
_1897
Dsui_1898: Dsui_1898 - putative signal transduction protein, at 1,997,344 to 1,998,252
_1898
Dsui_1899: Dsui_1899 - rRNA methylase, putative, group 3, at 1,998,445 to 1,999,206
_1899
Position (kb)
1997
1998
1999 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1996.362 kb on - strand at 1996.420 kb on + strand, within Dsui_1896 at 1996.420 kb on + strand, within Dsui_1896 at 1996.428 kb on - strand at 1996.448 kb on + strand, within Dsui_1896 at 1996.477 kb on + strand, within Dsui_1896 at 1996.530 kb on - strand, within Dsui_1896 at 1996.552 kb on + strand, within Dsui_1896 at 1996.552 kb on + strand, within Dsui_1896 at 1996.862 kb on - strand, within Dsui_1896 at 1996.931 kb on - strand, within Dsui_1896 at 1997.055 kb on - strand, within Dsui_1896 at 1997.113 kb on - strand at 1997.285 kb on - strand at 1997.309 kb on - strand, within Dsui_1897 at 1997.564 kb on + strand, within Dsui_1898 at 1997.591 kb on + strand, within Dsui_1898 at 1997.591 kb on - strand, within Dsui_1898 at 1997.638 kb on + strand, within Dsui_1898 at 1997.645 kb on - strand, within Dsui_1898 at 1997.650 kb on + strand, within Dsui_1898 at 1997.658 kb on - strand, within Dsui_1898 at 1997.694 kb on - strand, within Dsui_1898 at 1997.705 kb on + strand, within Dsui_1898 at 1997.804 kb on - strand, within Dsui_1898 at 1997.934 kb on + strand, within Dsui_1898 at 1997.942 kb on - strand, within Dsui_1898 at 1997.942 kb on - strand, within Dsui_1898 at 1998.039 kb on + strand, within Dsui_1898 at 1998.039 kb on + strand at 1998.047 kb on - strand, within Dsui_1898 at 1998.047 kb on - strand, within Dsui_1898 at 1998.064 kb on - strand, within Dsui_1898 at 1998.110 kb on - strand, within Dsui_1898 at 1998.207 kb on - strand at 1998.208 kb on + strand at 1998.216 kb on - strand at 1998.334 kb on - strand at 1998.455 kb on - strand at 1998.589 kb on + strand, within Dsui_1899 at 1998.667 kb on - strand, within Dsui_1899 at 1998.803 kb on - strand, within Dsui_1899 at 1998.873 kb on + strand, within Dsui_1899 at 1998.873 kb on + strand, within Dsui_1899 at 1998.881 kb on - strand at 1998.881 kb on - strand at 1998.937 kb on + strand, within Dsui_1899 at 1998.959 kb on + strand, within Dsui_1899 at 1999.014 kb on + strand, within Dsui_1899 at 1999.014 kb on + strand, within Dsui_1899 at 1999.017 kb on + strand, within Dsui_1899 at 1999.017 kb on + strand, within Dsui_1899 at 1999.017 kb on + strand, within Dsui_1899 at 1999.025 kb on - strand, within Dsui_1899
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 1,996,362 - -0.3 1,996,420 + Dsui_1896 0.36 +0.3 1,996,420 + Dsui_1896 0.36 +0.7 1,996,428 - +0.7 1,996,448 + Dsui_1896 0.38 -0.3 1,996,477 + Dsui_1896 0.41 -2.2 1,996,530 - Dsui_1896 0.45 -0.3 1,996,552 + Dsui_1896 0.47 -0.3 1,996,552 + Dsui_1896 0.47 -3.4 1,996,862 - Dsui_1896 0.71 -0.3 1,996,931 - Dsui_1896 0.77 +0.7 1,997,055 - Dsui_1896 0.87 -0.3 1,997,113 - +0.7 1,997,285 - +0.7 1,997,309 - Dsui_1897 0.64 -0.4 1,997,564 + Dsui_1898 0.24 +0.7 1,997,591 + Dsui_1898 0.27 -1.3 1,997,591 - Dsui_1898 0.27 -0.7 1,997,638 + Dsui_1898 0.32 -1.9 1,997,645 - Dsui_1898 0.33 +0.9 1,997,650 + Dsui_1898 0.34 -0.9 1,997,658 - Dsui_1898 0.35 -0.0 1,997,694 - Dsui_1898 0.39 +0.2 1,997,705 + Dsui_1898 0.40 +0.7 1,997,804 - Dsui_1898 0.51 -0.2 1,997,934 + Dsui_1898 0.65 -0.3 1,997,942 - Dsui_1898 0.66 -0.3 1,997,942 - Dsui_1898 0.66 -0.4 1,998,039 + Dsui_1898 0.76 -0.3 1,998,039 + +0.7 1,998,047 - Dsui_1898 0.77 -0.2 1,998,047 - Dsui_1898 0.77 -0.0 1,998,064 - Dsui_1898 0.79 -0.3 1,998,110 - Dsui_1898 0.84 +0.1 1,998,207 - -1.3 1,998,208 + -1.3 1,998,216 - -1.6 1,998,334 - +0.3 1,998,455 - +0.7 1,998,589 + Dsui_1899 0.19 -0.0 1,998,667 - Dsui_1899 0.29 -0.3 1,998,803 - Dsui_1899 0.47 +0.7 1,998,873 + Dsui_1899 0.56 -0.1 1,998,873 + Dsui_1899 0.56 +0.9 1,998,881 - +0.7 1,998,881 - +0.7 1,998,937 + Dsui_1899 0.65 +0.1 1,998,959 + Dsui_1899 0.67 -0.3 1,999,014 + Dsui_1899 0.75 -0.3 1,999,014 + Dsui_1899 0.75 -0.3 1,999,017 + Dsui_1899 0.75 -0.4 1,999,017 + Dsui_1899 0.75 -0.5 1,999,017 + Dsui_1899 0.75 -0.4 1,999,025 - Dsui_1899 0.76 -0.3
Or see this region's nucleotide sequence