Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1892 and Dsui_1893 are separated by 45 nucleotides Dsui_1893 and Dsui_1894 are separated by 36 nucleotides Dsui_1894 and Dsui_1895 overlap by 4 nucleotides Dsui_1895 and Dsui_1896 are separated by 72 nucleotides
Dsui_1892: Dsui_1892 - transcriptional regulator, at 1,993,079 to 1,993,966
_1892
Dsui_1893: Dsui_1893 - putative membrane protein, at 1,994,012 to 1,994,383
_1893
Dsui_1894: Dsui_1894 - E3 Ubiquitin ligase, at 1,994,420 to 1,995,325
_1894
Dsui_1895: Dsui_1895 - hypothetical protein, at 1,995,322 to 1,995,894
_1895
Dsui_1896: Dsui_1896 - arabinose efflux permease family protein, at 1,995,967 to 1,997,220
_1896
Position (kb)
1994
1995
1996 Strain fitness (log2 ratio)
-2
-1
0
1 at 1993.492 kb on - strand at 1993.497 kb on + strand, within Dsui_1892 at 1993.497 kb on + strand, within Dsui_1892 at 1993.616 kb on + strand, within Dsui_1892 at 1993.617 kb on + strand, within Dsui_1892 at 1993.617 kb on + strand, within Dsui_1892 at 1993.697 kb on + strand, within Dsui_1892 at 1993.705 kb on - strand, within Dsui_1892 at 1993.770 kb on - strand, within Dsui_1892 at 1993.837 kb on + strand, within Dsui_1892 at 1993.879 kb on + strand at 1993.880 kb on - strand at 1993.887 kb on - strand at 1993.887 kb on - strand at 1994.055 kb on + strand, within Dsui_1893 at 1994.289 kb on - strand at 1994.325 kb on + strand, within Dsui_1893 at 1994.345 kb on - strand, within Dsui_1893 at 1994.367 kb on + strand at 1994.441 kb on + strand at 1994.444 kb on - strand at 1994.444 kb on - strand at 1994.444 kb on - strand at 1994.444 kb on - strand at 1994.485 kb on - strand at 1994.593 kb on + strand, within Dsui_1894 at 1994.778 kb on + strand at 1994.867 kb on - strand, within Dsui_1894 at 1994.910 kb on - strand, within Dsui_1894 at 1994.993 kb on + strand, within Dsui_1894 at 1995.188 kb on - strand, within Dsui_1894 at 1995.188 kb on - strand, within Dsui_1894 at 1995.333 kb on - strand at 1995.565 kb on - strand, within Dsui_1895 at 1995.565 kb on - strand, within Dsui_1895 at 1995.605 kb on - strand, within Dsui_1895 at 1995.653 kb on + strand at 1995.661 kb on - strand, within Dsui_1895 at 1995.689 kb on + strand at 1995.742 kb on - strand, within Dsui_1895 at 1995.813 kb on + strand, within Dsui_1895 at 1995.829 kb on - strand, within Dsui_1895 at 1995.934 kb on + strand at 1995.960 kb on + strand at 1995.992 kb on - strand at 1996.074 kb on + strand at 1996.082 kb on - strand at 1996.113 kb on + strand, within Dsui_1896 at 1996.155 kb on - strand, within Dsui_1896 at 1996.273 kb on - strand, within Dsui_1896 at 1996.310 kb on + strand, within Dsui_1896 at 1996.310 kb on + strand, within Dsui_1896
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 1,993,492 - -0.3 1,993,497 + Dsui_1892 0.47 -0.3 1,993,497 + Dsui_1892 0.47 -0.9 1,993,616 + Dsui_1892 0.60 +0.1 1,993,617 + Dsui_1892 0.61 -0.6 1,993,617 + Dsui_1892 0.61 -1.3 1,993,697 + Dsui_1892 0.70 -0.3 1,993,705 - Dsui_1892 0.70 -0.9 1,993,770 - Dsui_1892 0.78 -2.1 1,993,837 + Dsui_1892 0.85 -1.5 1,993,879 + -1.8 1,993,880 - -1.3 1,993,887 - +1.3 1,993,887 - -0.3 1,994,055 + Dsui_1893 0.12 +0.7 1,994,289 - +0.7 1,994,325 + Dsui_1893 0.84 -2.6 1,994,345 - Dsui_1893 0.90 -0.9 1,994,367 + -0.3 1,994,441 + -0.3 1,994,444 - -0.9 1,994,444 - +1.3 1,994,444 - -0.3 1,994,444 - -0.9 1,994,485 - +0.7 1,994,593 + Dsui_1894 0.19 -0.3 1,994,778 + -0.3 1,994,867 - Dsui_1894 0.49 +0.7 1,994,910 - Dsui_1894 0.54 -1.9 1,994,993 + Dsui_1894 0.63 -2.3 1,995,188 - Dsui_1894 0.85 +0.7 1,995,188 - Dsui_1894 0.85 -0.3 1,995,333 - -1.3 1,995,565 - Dsui_1895 0.42 +0.7 1,995,565 - Dsui_1895 0.42 -0.3 1,995,605 - Dsui_1895 0.49 -0.3 1,995,653 + +0.7 1,995,661 - Dsui_1895 0.59 +0.7 1,995,689 + +0.7 1,995,742 - Dsui_1895 0.73 -2.3 1,995,813 + Dsui_1895 0.86 -1.3 1,995,829 - Dsui_1895 0.88 -0.5 1,995,934 + +0.7 1,995,960 + +0.7 1,995,992 - -0.3 1,996,074 + -2.0 1,996,082 - +0.7 1,996,113 + Dsui_1896 0.12 +1.7 1,996,155 - Dsui_1896 0.15 -0.9 1,996,273 - Dsui_1896 0.24 -1.3 1,996,310 + Dsui_1896 0.27 -2.4 1,996,310 + Dsui_1896 0.27 -0.9
Or see this region's nucleotide sequence