Strain Fitness in Dechlorosoma suillum PS around Dsui_1886

Experiment: ALP with Zinc 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1884 and Dsui_1885 are separated by 13 nucleotidesDsui_1885 and Dsui_1886 overlap by 8 nucleotidesDsui_1886 and Dsui_1887 overlap by 4 nucleotides Dsui_1884: Dsui_1884 - histidine kinase, at 1,982,664 to 1,983,827 _1884 Dsui_1885: Dsui_1885 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,983,841 to 1,984,383 _1885 Dsui_1886: Dsui_1886 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,984,376 to 1,985,689 _1886 Dsui_1887: Dsui_1887 - PAS domain S-box, at 1,985,686 to 1,987,896 _1887 Position (kb) 1984 1985 1986Strain fitness (log2 ratio) -3 -2 -1 0 1at 1983.421 kb on + strand, within Dsui_1884at 1983.435 kb on - strand, within Dsui_1884at 1983.634 kb on - strand, within Dsui_1884at 1984.038 kb on - strand, within Dsui_1885at 1984.043 kb on - strand, within Dsui_1885at 1984.083 kb on - strand, within Dsui_1885at 1984.091 kb on + strand, within Dsui_1885at 1984.223 kb on - strand, within Dsui_1885at 1984.243 kb on - strand, within Dsui_1885at 1984.256 kb on + strand, within Dsui_1885at 1984.406 kb on + strandat 1984.520 kb on + strand, within Dsui_1886at 1984.673 kb on + strandat 1984.680 kb on - strand, within Dsui_1886at 1984.680 kb on - strand, within Dsui_1886at 1984.737 kb on + strand, within Dsui_1886at 1984.809 kb on - strand, within Dsui_1886at 1984.848 kb on - strand, within Dsui_1886at 1984.929 kb on - strand, within Dsui_1886at 1985.011 kb on + strandat 1985.162 kb on - strand, within Dsui_1886at 1985.190 kb on - strand, within Dsui_1886at 1985.190 kb on - strand, within Dsui_1886at 1985.195 kb on + strand, within Dsui_1886at 1985.293 kb on - strand, within Dsui_1886at 1985.366 kb on + strandat 1985.445 kb on - strand, within Dsui_1886at 1985.454 kb on - strand, within Dsui_1886at 1985.459 kb on - strand, within Dsui_1886at 1985.508 kb on - strand, within Dsui_1886at 1985.508 kb on - strand, within Dsui_1886at 1985.508 kb on - strand, within Dsui_1886at 1985.648 kb on - strandat 1985.658 kb on - strandat 1985.738 kb on + strandat 1985.752 kb on - strandat 1985.814 kb on + strandat 1985.816 kb on - strandat 1985.822 kb on - strandat 1985.958 kb on + strandat 1985.961 kb on - strand, within Dsui_1887at 1985.979 kb on - strand, within Dsui_1887at 1986.012 kb on + strandat 1986.138 kb on - strand, within Dsui_1887at 1986.264 kb on - strand, within Dsui_1887at 1986.404 kb on - strand, within Dsui_1887at 1986.420 kb on + strand, within Dsui_1887at 1986.507 kb on + strand, within Dsui_1887at 1986.515 kb on - strand, within Dsui_1887at 1986.635 kb on + strandat 1986.675 kb on - strand, within Dsui_1887

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
remove
1,983,421 + Dsui_1884 0.65 -1.8
1,983,435 - Dsui_1884 0.66 -1.3
1,983,634 - Dsui_1884 0.83 -0.3
1,984,038 - Dsui_1885 0.36 -1.3
1,984,043 - Dsui_1885 0.37 -0.8
1,984,083 - Dsui_1885 0.45 -0.8
1,984,091 + Dsui_1885 0.46 +0.7
1,984,223 - Dsui_1885 0.70 +0.1
1,984,243 - Dsui_1885 0.74 +0.7
1,984,256 + Dsui_1885 0.76 -0.3
1,984,406 + +0.7
1,984,520 + Dsui_1886 0.11 -1.8
1,984,673 + +0.7
1,984,680 - Dsui_1886 0.23 -1.9
1,984,680 - Dsui_1886 0.23 -1.1
1,984,737 + Dsui_1886 0.27 +0.7
1,984,809 - Dsui_1886 0.33 +0.1
1,984,848 - Dsui_1886 0.36 -0.7
1,984,929 - Dsui_1886 0.42 -3.0
1,985,011 + +0.7
1,985,162 - Dsui_1886 0.60 -0.9
1,985,190 - Dsui_1886 0.62 -0.3
1,985,190 - Dsui_1886 0.62 -1.3
1,985,195 + Dsui_1886 0.62 +0.7
1,985,293 - Dsui_1886 0.70 -1.9
1,985,366 + +0.7
1,985,445 - Dsui_1886 0.81 -1.3
1,985,454 - Dsui_1886 0.82 -0.3
1,985,459 - Dsui_1886 0.82 -1.9
1,985,508 - Dsui_1886 0.86 -0.3
1,985,508 - Dsui_1886 0.86 +0.1
1,985,508 - Dsui_1886 0.86 -1.1
1,985,648 - -1.4
1,985,658 - -2.3
1,985,738 + +0.7
1,985,752 - -1.1
1,985,814 + +0.7
1,985,816 - -1.5
1,985,822 - -0.3
1,985,958 + +0.7
1,985,961 - Dsui_1887 0.12 -0.3
1,985,979 - Dsui_1887 0.13 +0.7
1,986,012 + +0.7
1,986,138 - Dsui_1887 0.20 +0.7
1,986,264 - Dsui_1887 0.26 +0.7
1,986,404 - Dsui_1887 0.32 -2.3
1,986,420 + Dsui_1887 0.33 -2.1
1,986,507 + Dsui_1887 0.37 +0.7
1,986,515 - Dsui_1887 0.37 +0.7
1,986,635 + -0.3
1,986,675 - Dsui_1887 0.45 +0.7

Or see this region's nucleotide sequence