Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1860 and Dsui_1861 are separated by 331 nucleotides Dsui_1861 and Dsui_1862 are separated by 15 nucleotides Dsui_1862 and Dsui_1863 are separated by 191 nucleotides
Dsui_1860: Dsui_1860 - methyl-accepting chemotaxis protein, at 1,953,526 to 1,955,175
_1860
Dsui_1861: Dsui_1861 - HPt domain-containing protein, at 1,955,507 to 1,955,905
_1861
Dsui_1862: Dsui_1862 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,955,921 to 1,956,574
_1862
Dsui_1863: Dsui_1863 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,956,766 to 1,957,806
_1863
Position (kb)
1955
1956
1957 Strain fitness (log2 ratio)
-2
-1
0
1 at 1955.022 kb on - strand at 1955.067 kb on + strand at 1955.075 kb on - strand at 1955.136 kb on + strand at 1955.167 kb on + strand at 1955.207 kb on - strand at 1955.288 kb on + strand at 1955.384 kb on - strand at 1955.580 kb on - strand, within Dsui_1861 at 1955.636 kb on - strand, within Dsui_1861 at 1955.659 kb on - strand, within Dsui_1861 at 1955.899 kb on + strand at 1955.985 kb on - strand at 1956.212 kb on - strand, within Dsui_1862 at 1956.282 kb on + strand, within Dsui_1862 at 1956.314 kb on - strand, within Dsui_1862 at 1956.387 kb on - strand, within Dsui_1862 at 1956.497 kb on - strand, within Dsui_1862 at 1956.497 kb on - strand, within Dsui_1862 at 1956.695 kb on - strand at 1956.806 kb on + strand at 1956.819 kb on - strand at 1956.880 kb on + strand, within Dsui_1863 at 1956.958 kb on - strand at 1957.026 kb on + strand, within Dsui_1863 at 1957.057 kb on - strand at 1957.280 kb on + strand, within Dsui_1863 at 1957.280 kb on + strand, within Dsui_1863 at 1957.424 kb on - strand at 1957.424 kb on - strand at 1957.476 kb on + strand, within Dsui_1863
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 1,955,022 - +0.7 1,955,067 + -2.3 1,955,075 - -0.9 1,955,136 + -1.3 1,955,167 + +0.7 1,955,207 - +0.7 1,955,288 + -0.9 1,955,384 - +0.7 1,955,580 - Dsui_1861 0.18 -1.6 1,955,636 - Dsui_1861 0.32 -0.3 1,955,659 - Dsui_1861 0.38 +0.7 1,955,899 + -1.3 1,955,985 - +0.1 1,956,212 - Dsui_1862 0.44 +0.2 1,956,282 + Dsui_1862 0.55 -0.3 1,956,314 - Dsui_1862 0.60 +0.2 1,956,387 - Dsui_1862 0.71 -0.0 1,956,497 - Dsui_1862 0.88 +0.3 1,956,497 - Dsui_1862 0.88 -0.7 1,956,695 - -1.3 1,956,806 + -1.4 1,956,819 - +0.7 1,956,880 + Dsui_1863 0.11 -1.9 1,956,958 - +0.7 1,957,026 + Dsui_1863 0.25 -1.6 1,957,057 - +0.7 1,957,280 + Dsui_1863 0.49 -0.3 1,957,280 + Dsui_1863 0.49 +0.7 1,957,424 - -0.3 1,957,424 - -0.3 1,957,476 + Dsui_1863 0.68 +0.7
Or see this region's nucleotide sequence