Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1723 and Dsui_1724 overlap by 4 nucleotides Dsui_1724 and Dsui_1725 overlap by 20 nucleotides Dsui_1725 and Dsui_1726 are separated by 12 nucleotides
Dsui_1723: Dsui_1723 - flagellar biosynthesis protein FlhA, at 1,813,427 to 1,815,508
_1723
Dsui_1724: Dsui_1724 - flagellar biosynthetic protein FlhF, at 1,815,505 to 1,816,872
_1724
Dsui_1725: Dsui_1725 - ATPase involved in chromosome partitioning, at 1,816,853 to 1,817,755
_1725
Dsui_1726: Dsui_1726 - RNA polymerase sigma factor, FliA/WhiG family, at 1,817,768 to 1,818,508
_1726
Position (kb)
1815
1816
1817 Strain fitness (log2 ratio)
-2
-1
0
1 at 1814.529 kb on - strand, within Dsui_1723 at 1814.550 kb on + strand, within Dsui_1723 at 1814.559 kb on - strand, within Dsui_1723 at 1814.617 kb on - strand, within Dsui_1723 at 1814.638 kb on + strand, within Dsui_1723 at 1814.649 kb on + strand, within Dsui_1723 at 1814.649 kb on + strand, within Dsui_1723 at 1814.657 kb on - strand, within Dsui_1723 at 1814.657 kb on - strand, within Dsui_1723 at 1814.684 kb on - strand, within Dsui_1723 at 1814.691 kb on - strand, within Dsui_1723 at 1814.782 kb on - strand, within Dsui_1723 at 1814.845 kb on + strand, within Dsui_1723 at 1814.906 kb on + strand, within Dsui_1723 at 1815.010 kb on + strand, within Dsui_1723 at 1815.038 kb on + strand, within Dsui_1723 at 1815.046 kb on - strand, within Dsui_1723 at 1815.065 kb on + strand, within Dsui_1723 at 1815.073 kb on - strand, within Dsui_1723 at 1815.137 kb on + strand, within Dsui_1723 at 1815.137 kb on + strand, within Dsui_1723 at 1815.137 kb on + strand, within Dsui_1723 at 1815.142 kb on + strand, within Dsui_1723 at 1815.145 kb on - strand, within Dsui_1723 at 1815.150 kb on - strand, within Dsui_1723 at 1815.152 kb on - strand, within Dsui_1723 at 1815.341 kb on + strand at 1815.347 kb on + strand at 1815.430 kb on + strand at 1815.437 kb on - strand at 1815.490 kb on + strand at 1815.552 kb on - strand at 1815.671 kb on + strand, within Dsui_1724 at 1815.693 kb on + strand, within Dsui_1724 at 1815.719 kb on - strand, within Dsui_1724 at 1815.727 kb on - strand, within Dsui_1724 at 1815.909 kb on + strand, within Dsui_1724 at 1815.951 kb on + strand, within Dsui_1724 at 1815.981 kb on + strand, within Dsui_1724 at 1815.989 kb on - strand, within Dsui_1724 at 1816.003 kb on + strand, within Dsui_1724 at 1816.010 kb on - strand, within Dsui_1724 at 1816.122 kb on + strand, within Dsui_1724 at 1816.252 kb on - strand, within Dsui_1724 at 1816.299 kb on + strand, within Dsui_1724 at 1816.338 kb on - strand, within Dsui_1724 at 1816.375 kb on + strand, within Dsui_1724 at 1816.438 kb on - strand, within Dsui_1724 at 1816.572 kb on - strand, within Dsui_1724 at 1816.679 kb on + strand, within Dsui_1724 at 1816.687 kb on - strand, within Dsui_1724 at 1816.927 kb on - strand at 1817.019 kb on - strand, within Dsui_1725 at 1817.019 kb on - strand at 1817.230 kb on - strand, within Dsui_1725 at 1817.236 kb on - strand, within Dsui_1725 at 1817.376 kb on + strand, within Dsui_1725 at 1817.443 kb on + strand, within Dsui_1725 at 1817.451 kb on - strand, within Dsui_1725 at 1817.517 kb on + strand, within Dsui_1725 at 1817.540 kb on + strand, within Dsui_1725 at 1817.548 kb on - strand, within Dsui_1725 at 1817.655 kb on + strand, within Dsui_1725 at 1817.655 kb on + strand, within Dsui_1725 at 1817.749 kb on - strand at 1817.750 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 1,814,529 - Dsui_1723 0.53 +0.5 1,814,550 + Dsui_1723 0.54 +0.7 1,814,559 - Dsui_1723 0.54 +0.5 1,814,617 - Dsui_1723 0.57 -0.5 1,814,638 + Dsui_1723 0.58 +0.1 1,814,649 + Dsui_1723 0.59 +0.1 1,814,649 + Dsui_1723 0.59 -0.0 1,814,657 - Dsui_1723 0.59 -1.1 1,814,657 - Dsui_1723 0.59 -0.5 1,814,684 - Dsui_1723 0.60 -1.1 1,814,691 - Dsui_1723 0.61 +0.5 1,814,782 - Dsui_1723 0.65 -0.5 1,814,845 + Dsui_1723 0.68 +0.2 1,814,906 + Dsui_1723 0.71 +0.1 1,815,010 + Dsui_1723 0.76 +0.6 1,815,038 + Dsui_1723 0.77 -0.3 1,815,046 - Dsui_1723 0.78 +0.5 1,815,065 + Dsui_1723 0.79 +0.2 1,815,073 - Dsui_1723 0.79 +0.5 1,815,137 + Dsui_1723 0.82 +0.2 1,815,137 + Dsui_1723 0.82 +0.2 1,815,137 + Dsui_1723 0.82 +0.2 1,815,142 + Dsui_1723 0.82 -0.1 1,815,145 - Dsui_1723 0.83 -1.1 1,815,150 - Dsui_1723 0.83 -1.5 1,815,152 - Dsui_1723 0.83 -1.1 1,815,341 + +0.2 1,815,347 + +0.1 1,815,430 + +0.3 1,815,437 - +0.5 1,815,490 + -0.1 1,815,552 - -1.1 1,815,671 + Dsui_1724 0.12 +0.1 1,815,693 + Dsui_1724 0.14 -0.2 1,815,719 - Dsui_1724 0.16 +0.5 1,815,727 - Dsui_1724 0.16 -2.7 1,815,909 + Dsui_1724 0.30 +0.1 1,815,951 + Dsui_1724 0.33 -0.2 1,815,981 + Dsui_1724 0.35 +0.2 1,815,989 - Dsui_1724 0.35 -1.5 1,816,003 + Dsui_1724 0.36 -0.1 1,816,010 - Dsui_1724 0.37 -1.8 1,816,122 + Dsui_1724 0.45 +0.1 1,816,252 - Dsui_1724 0.55 -0.5 1,816,299 + Dsui_1724 0.58 -0.1 1,816,338 - Dsui_1724 0.61 -1.1 1,816,375 + Dsui_1724 0.64 -0.0 1,816,438 - Dsui_1724 0.68 -1.5 1,816,572 - Dsui_1724 0.78 -0.5 1,816,679 + Dsui_1724 0.86 +0.1 1,816,687 - Dsui_1724 0.86 +0.5 1,816,927 - -0.5 1,817,019 - Dsui_1725 0.18 +0.5 1,817,019 - +0.5 1,817,230 - Dsui_1725 0.42 -0.5 1,817,236 - Dsui_1725 0.42 -1.5 1,817,376 + Dsui_1725 0.58 +0.0 1,817,443 + Dsui_1725 0.65 -0.2 1,817,451 - Dsui_1725 0.66 -0.5 1,817,517 + Dsui_1725 0.74 -0.1 1,817,540 + Dsui_1725 0.76 -0.1 1,817,548 - Dsui_1725 0.77 -0.5 1,817,655 + Dsui_1725 0.89 +0.0 1,817,655 + Dsui_1725 0.89 -0.2 1,817,749 - -0.5 1,817,750 + -0.1
Or see this region's nucleotide sequence