Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1716 and Dsui_1717 are separated by 179 nucleotides Dsui_1717 and Dsui_1718 are separated by 21 nucleotides Dsui_1718 and Dsui_1719 are separated by 18 nucleotides
Dsui_1716: Dsui_1716 - methyl-accepting chemotaxis protein, at 1,805,245 to 1,806,825
_1716
Dsui_1717: Dsui_1717 - chemotaxis signal transduction protein, at 1,807,005 to 1,807,973
_1717
Dsui_1718: Dsui_1718 - chemotaxis signal transduction protein, at 1,807,995 to 1,808,933
_1718
Dsui_1719: Dsui_1719 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,808,952 to 1,809,344
_1719
Position (kb)
1807
1808 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1806.011 kb on - strand, within Dsui_1716 at 1806.027 kb on - strand, within Dsui_1716 at 1806.123 kb on - strand, within Dsui_1716 at 1806.158 kb on + strand, within Dsui_1716 at 1806.166 kb on - strand, within Dsui_1716 at 1806.200 kb on - strand, within Dsui_1716 at 1806.218 kb on + strand, within Dsui_1716 at 1806.306 kb on - strand at 1806.376 kb on + strand, within Dsui_1716 at 1806.472 kb on + strand, within Dsui_1716 at 1806.537 kb on - strand, within Dsui_1716 at 1806.564 kb on + strand, within Dsui_1716 at 1806.571 kb on + strand, within Dsui_1716 at 1806.580 kb on - strand, within Dsui_1716 at 1806.580 kb on - strand, within Dsui_1716 at 1806.607 kb on + strand, within Dsui_1716 at 1806.615 kb on - strand, within Dsui_1716 at 1806.650 kb on - strand, within Dsui_1716 at 1806.692 kb on - strand at 1806.710 kb on - strand at 1806.771 kb on + strand at 1806.774 kb on - strand at 1806.783 kb on + strand at 1806.783 kb on + strand at 1806.783 kb on + strand at 1806.783 kb on + strand at 1806.791 kb on - strand at 1806.791 kb on - strand at 1806.791 kb on - strand at 1806.791 kb on - strand at 1806.819 kb on + strand at 1806.882 kb on + strand at 1806.882 kb on + strand at 1806.889 kb on + strand at 1806.890 kb on - strand at 1806.999 kb on + strand at 1806.999 kb on - strand at 1807.001 kb on + strand at 1807.002 kb on - strand at 1807.002 kb on - strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.006 kb on + strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.014 kb on - strand at 1807.016 kb on + strand at 1807.016 kb on + strand at 1807.016 kb on + strand at 1807.024 kb on - strand at 1807.024 kb on - strand at 1807.024 kb on - strand at 1807.054 kb on + strand at 1807.117 kb on + strand, within Dsui_1717 at 1807.166 kb on + strand, within Dsui_1717 at 1807.205 kb on - strand, within Dsui_1717 at 1807.222 kb on + strand, within Dsui_1717 at 1807.263 kb on + strand, within Dsui_1717 at 1807.271 kb on - strand, within Dsui_1717 at 1807.345 kb on + strand, within Dsui_1717 at 1807.393 kb on + strand, within Dsui_1717 at 1807.600 kb on + strand, within Dsui_1717 at 1807.726 kb on + strand, within Dsui_1717 at 1807.726 kb on + strand, within Dsui_1717 at 1807.726 kb on + strand, within Dsui_1717 at 1807.726 kb on + strand, within Dsui_1717 at 1807.734 kb on - strand, within Dsui_1717 at 1807.734 kb on - strand, within Dsui_1717 at 1807.765 kb on + strand, within Dsui_1717 at 1807.773 kb on - strand, within Dsui_1717 at 1807.784 kb on + strand, within Dsui_1717 at 1807.792 kb on - strand, within Dsui_1717 at 1807.792 kb on - strand, within Dsui_1717 at 1807.846 kb on + strand, within Dsui_1717 at 1807.942 kb on + strand at 1807.950 kb on - strand at 1807.968 kb on + strand at 1807.968 kb on + strand at 1807.970 kb on - strand at 1807.978 kb on + strand at 1808.046 kb on + strand at 1808.046 kb on - strand at 1808.054 kb on - strand at 1808.073 kb on + strand at 1808.074 kb on - strand at 1808.118 kb on - strand, within Dsui_1718 at 1808.127 kb on - strand, within Dsui_1718 at 1808.148 kb on + strand, within Dsui_1718 at 1808.154 kb on - strand, within Dsui_1718 at 1808.235 kb on + strand, within Dsui_1718 at 1808.281 kb on - strand, within Dsui_1718 at 1808.437 kb on + strand, within Dsui_1718 at 1808.648 kb on - strand, within Dsui_1718 at 1808.709 kb on + strand, within Dsui_1718 at 1808.722 kb on - strand, within Dsui_1718 at 1808.749 kb on + strand, within Dsui_1718 at 1808.749 kb on + strand, within Dsui_1718 at 1808.846 kb on + strand at 1808.921 kb on + strand at 1808.943 kb on + strand at 1808.961 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 1,806,011 - Dsui_1716 0.48 -2.1 1,806,027 - Dsui_1716 0.49 -0.5 1,806,123 - Dsui_1716 0.56 -3.4 1,806,158 + Dsui_1716 0.58 -0.3 1,806,166 - Dsui_1716 0.58 +0.5 1,806,200 - Dsui_1716 0.60 +0.5 1,806,218 + Dsui_1716 0.62 -0.9 1,806,306 - -1.1 1,806,376 + Dsui_1716 0.72 +0.7 1,806,472 + Dsui_1716 0.78 -1.3 1,806,537 - Dsui_1716 0.82 +0.5 1,806,564 + Dsui_1716 0.83 -1.1 1,806,571 + Dsui_1716 0.84 -0.1 1,806,580 - Dsui_1716 0.84 +0.5 1,806,580 - Dsui_1716 0.84 -1.5 1,806,607 + Dsui_1716 0.86 -0.9 1,806,615 - Dsui_1716 0.87 -1.1 1,806,650 - Dsui_1716 0.89 -1.1 1,806,692 - +0.5 1,806,710 - +0.5 1,806,771 + -0.6 1,806,774 - +0.5 1,806,783 + +0.5 1,806,783 + -2.1 1,806,783 + -0.7 1,806,783 + -2.5 1,806,791 - -1.7 1,806,791 - +0.5 1,806,791 - -0.5 1,806,791 - +0.5 1,806,819 + +0.1 1,806,882 + +0.3 1,806,882 + +0.1 1,806,889 + -0.2 1,806,890 - -1.1 1,806,999 + +0.1 1,806,999 - -0.5 1,807,001 + +0.2 1,807,002 - -1.1 1,807,002 - +0.5 1,807,006 + -0.2 1,807,006 + -0.1 1,807,006 + -0.0 1,807,006 + -0.1 1,807,006 + +0.0 1,807,006 + -0.0 1,807,006 + -0.3 1,807,006 + -0.1 1,807,006 + +0.1 1,807,006 + -0.2 1,807,006 + +0.0 1,807,006 + +0.2 1,807,006 + -0.1 1,807,006 + -0.3 1,807,006 + +0.3 1,807,006 + +0.7 1,807,006 + -0.3 1,807,006 + -0.1 1,807,006 + +0.0 1,807,006 + -0.1 1,807,006 + -0.0 1,807,006 + -0.0 1,807,006 + +0.0 1,807,006 + +0.2 1,807,006 + +0.2 1,807,006 + -0.7 1,807,006 + +0.3 1,807,006 + -0.2 1,807,006 + +0.2 1,807,006 + -0.0 1,807,006 + -0.0 1,807,006 + +0.2 1,807,006 + +0.2 1,807,006 + -0.0 1,807,006 + -0.0 1,807,006 + -0.2 1,807,006 + -0.0 1,807,006 + +0.2 1,807,006 + +0.0 1,807,006 + +0.2 1,807,006 + +0.1 1,807,006 + -1.9 1,807,006 + +0.1 1,807,006 + -0.1 1,807,006 + -0.1 1,807,006 + +0.3 1,807,006 + +0.1 1,807,006 + +0.1 1,807,006 + -0.1 1,807,006 + -0.2 1,807,006 + +0.3 1,807,006 + -0.0 1,807,006 + +0.0 1,807,006 + -0.0 1,807,006 + +0.2 1,807,006 + +0.2 1,807,006 + +0.4 1,807,006 + -0.3 1,807,006 + +0.3 1,807,006 + -0.0 1,807,014 - +0.5 1,807,014 - +0.5 1,807,014 - +0.5 1,807,014 - -1.1 1,807,014 - -1.1 1,807,014 - +0.5 1,807,014 - +0.5 1,807,014 - -0.5 1,807,014 - +0.5 1,807,014 - -1.5 1,807,014 - -1.1 1,807,014 - -0.5 1,807,014 - +0.5 1,807,014 - -0.5 1,807,014 - +0.5 1,807,014 - +0.5 1,807,014 - -0.5 1,807,014 - +0.5 1,807,014 - -1.5 1,807,014 - +0.5 1,807,014 - -1.1 1,807,014 - -0.5 1,807,014 - -0.5 1,807,014 - +0.5 1,807,014 - +0.5 1,807,014 - +0.5 1,807,014 - +0.5 1,807,014 - +0.5 1,807,014 - +0.5 1,807,014 - -2.3 1,807,014 - -0.5 1,807,014 - +0.5 1,807,014 - -1.1 1,807,016 + -0.4 1,807,016 + -0.1 1,807,016 + +0.2 1,807,024 - -1.9 1,807,024 - -0.5 1,807,024 - -1.5 1,807,054 + +0.2 1,807,117 + Dsui_1717 0.12 +0.1 1,807,166 + Dsui_1717 0.17 +0.2 1,807,205 - Dsui_1717 0.21 -1.1 1,807,222 + Dsui_1717 0.22 +0.3 1,807,263 + Dsui_1717 0.27 +0.1 1,807,271 - Dsui_1717 0.27 +0.5 1,807,345 + Dsui_1717 0.35 +0.0 1,807,393 + Dsui_1717 0.40 -0.1 1,807,600 + Dsui_1717 0.61 +0.1 1,807,726 + Dsui_1717 0.74 -0.0 1,807,726 + Dsui_1717 0.74 +0.0 1,807,726 + Dsui_1717 0.74 +0.1 1,807,726 + Dsui_1717 0.74 +0.6 1,807,734 - Dsui_1717 0.75 -1.9 1,807,734 - Dsui_1717 0.75 +0.5 1,807,765 + Dsui_1717 0.78 -0.0 1,807,773 - Dsui_1717 0.79 +0.5 1,807,784 + Dsui_1717 0.80 +0.3 1,807,792 - Dsui_1717 0.81 -0.5 1,807,792 - Dsui_1717 0.81 -1.1 1,807,846 + Dsui_1717 0.87 +0.1 1,807,942 + -0.4 1,807,950 - +0.5 1,807,968 + -0.0 1,807,968 + +0.1 1,807,970 - -0.5 1,807,978 + +0.1 1,808,046 + +0.2 1,808,046 - -1.1 1,808,054 - -0.5 1,808,073 + +0.1 1,808,074 - -2.1 1,808,118 - Dsui_1718 0.13 -2.1 1,808,127 - Dsui_1718 0.14 -0.5 1,808,148 + Dsui_1718 0.16 +0.1 1,808,154 - Dsui_1718 0.17 -3.0 1,808,235 + Dsui_1718 0.26 +0.1 1,808,281 - Dsui_1718 0.30 -1.1 1,808,437 + Dsui_1718 0.47 +0.2 1,808,648 - Dsui_1718 0.70 -2.1 1,808,709 + Dsui_1718 0.76 +0.0 1,808,722 - Dsui_1718 0.77 +0.5 1,808,749 + Dsui_1718 0.80 -0.0 1,808,749 + Dsui_1718 0.80 +0.0 1,808,846 + +0.0 1,808,921 + +0.2 1,808,943 + +0.1 1,808,961 - -2.3
Or see this region's nucleotide sequence