Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1711 and Dsui_1712 overlap by 26 nucleotides Dsui_1712 and Dsui_1713 are separated by 6 nucleotides Dsui_1713 and Dsui_1714 are separated by 68 nucleotides Dsui_1714 and Dsui_1715 are separated by 14 nucleotides
Dsui_1711: Dsui_1711 - methylase of chemotaxis methyl-accepting protein, at 1,800,408 to 1,801,286
_1711
Dsui_1712: Dsui_1712 - chemotaxis protein, at 1,801,261 to 1,801,908
_1712
Dsui_1713: Dsui_1713 - chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 1,801,915 to 1,802,940
_1713
Dsui_1714: Dsui_1714 - anti-anti-sigma factor, at 1,803,009 to 1,803,314
_1714
Dsui_1715: Dsui_1715 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 1,803,329 to 1,805,083
_1715
Position (kb)
1801
1802
1803 Strain fitness (log2 ratio)
-2
-1
0
1 at 1800.959 kb on + strand, within Dsui_1711 at 1800.967 kb on - strand, within Dsui_1711 at 1800.999 kb on + strand, within Dsui_1711 at 1800.999 kb on + strand, within Dsui_1711 at 1800.999 kb on + strand, within Dsui_1711 at 1800.999 kb on + strand, within Dsui_1711 at 1801.007 kb on - strand, within Dsui_1711 at 1801.193 kb on - strand, within Dsui_1711 at 1801.267 kb on - strand at 1801.395 kb on - strand, within Dsui_1712 at 1801.511 kb on - strand, within Dsui_1712 at 1801.527 kb on + strand, within Dsui_1712 at 1801.611 kb on + strand, within Dsui_1712 at 1801.780 kb on - strand, within Dsui_1712 at 1801.823 kb on + strand, within Dsui_1712 at 1801.861 kb on + strand at 1801.869 kb on - strand at 1801.905 kb on - strand at 1801.917 kb on + strand at 1801.955 kb on + strand at 1802.076 kb on + strand, within Dsui_1713 at 1802.110 kb on - strand, within Dsui_1713 at 1802.110 kb on - strand, within Dsui_1713 at 1802.238 kb on + strand, within Dsui_1713 at 1802.278 kb on - strand, within Dsui_1713 at 1802.579 kb on - strand, within Dsui_1713 at 1802.635 kb on - strand, within Dsui_1713 at 1802.655 kb on + strand, within Dsui_1713 at 1802.692 kb on + strand, within Dsui_1713 at 1802.740 kb on - strand, within Dsui_1713 at 1802.834 kb on + strand, within Dsui_1713 at 1802.847 kb on - strand at 1802.863 kb on + strand at 1802.977 kb on + strand at 1802.983 kb on - strand at 1802.983 kb on - strand at 1803.011 kb on + strand at 1803.019 kb on + strand at 1803.019 kb on + strand at 1803.019 kb on + strand at 1803.024 kb on + strand at 1803.027 kb on - strand at 1803.027 kb on - strand at 1803.027 kb on - strand at 1803.029 kb on + strand at 1803.099 kb on + strand, within Dsui_1714 at 1803.099 kb on + strand, within Dsui_1714 at 1803.103 kb on + strand, within Dsui_1714 at 1803.107 kb on - strand, within Dsui_1714 at 1803.138 kb on + strand, within Dsui_1714 at 1803.147 kb on + strand, within Dsui_1714 at 1803.194 kb on - strand, within Dsui_1714 at 1803.198 kb on - strand at 1803.205 kb on + strand, within Dsui_1714 at 1803.219 kb on - strand at 1803.259 kb on + strand, within Dsui_1714 at 1803.267 kb on - strand, within Dsui_1714 at 1803.319 kb on + strand at 1803.319 kb on + strand at 1803.319 kb on + strand at 1803.471 kb on + strand at 1803.478 kb on - strand at 1803.684 kb on + strand, within Dsui_1715 at 1803.799 kb on - strand, within Dsui_1715 at 1803.799 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 1,800,959 + Dsui_1711 0.63 -1.0 1,800,967 - Dsui_1711 0.64 -2.1 1,800,999 + Dsui_1711 0.67 -0.5 1,800,999 + Dsui_1711 0.67 -0.3 1,800,999 + Dsui_1711 0.67 -1.4 1,800,999 + Dsui_1711 0.67 +0.3 1,801,007 - Dsui_1711 0.68 +0.5 1,801,193 - Dsui_1711 0.89 -2.1 1,801,267 - +0.5 1,801,395 - Dsui_1712 0.21 -1.5 1,801,511 - Dsui_1712 0.39 +0.5 1,801,527 + Dsui_1712 0.41 -0.7 1,801,611 + Dsui_1712 0.54 -0.1 1,801,780 - Dsui_1712 0.80 +0.5 1,801,823 + Dsui_1712 0.87 -1.5 1,801,861 + -0.4 1,801,869 - +0.5 1,801,905 - +0.5 1,801,917 + -0.5 1,801,955 + -0.9 1,802,076 + Dsui_1713 0.16 -1.0 1,802,110 - Dsui_1713 0.19 -0.5 1,802,110 - Dsui_1713 0.19 -1.1 1,802,238 + Dsui_1713 0.31 -1.6 1,802,278 - Dsui_1713 0.35 +0.5 1,802,579 - Dsui_1713 0.65 -0.5 1,802,635 - Dsui_1713 0.70 +0.5 1,802,655 + Dsui_1713 0.72 -0.4 1,802,692 + Dsui_1713 0.76 -1.1 1,802,740 - Dsui_1713 0.80 -1.5 1,802,834 + Dsui_1713 0.90 -0.9 1,802,847 - +0.5 1,802,863 + +0.5 1,802,977 + -0.2 1,802,983 - +0.5 1,802,983 - -0.5 1,803,011 + -0.2 1,803,019 + -0.4 1,803,019 + -0.3 1,803,019 + -0.1 1,803,024 + -0.3 1,803,027 - -1.1 1,803,027 - +0.5 1,803,027 - +0.5 1,803,029 + -0.2 1,803,099 + Dsui_1714 0.29 -0.2 1,803,099 + Dsui_1714 0.29 +0.2 1,803,103 + Dsui_1714 0.31 +0.4 1,803,107 - Dsui_1714 0.32 -1.5 1,803,138 + Dsui_1714 0.42 -0.6 1,803,147 + Dsui_1714 0.45 -0.5 1,803,194 - Dsui_1714 0.60 -1.1 1,803,198 - +0.5 1,803,205 + Dsui_1714 0.64 +0.0 1,803,219 - +0.5 1,803,259 + Dsui_1714 0.82 -0.4 1,803,267 - Dsui_1714 0.84 +0.5 1,803,319 + -0.5 1,803,319 + +0.5 1,803,319 + -0.5 1,803,471 + -0.3 1,803,478 - -1.1 1,803,684 + Dsui_1715 0.20 -0.5 1,803,799 - Dsui_1715 0.27 +0.5 1,803,799 - +0.5
Or see this region's nucleotide sequence