Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1662 and Dsui_1663 are separated by 162 nucleotides Dsui_1663 and Dsui_1664 are separated by 101 nucleotides Dsui_1664 and Dsui_1665 are separated by 33 nucleotides
Dsui_1662: Dsui_1662 - Oxidoreductase NAD-binding domain/Flavodoxin, at 1,745,910 to 1,747,262
_1662
Dsui_1663: Dsui_1663 - ABC-type Co2+ transport system, periplasmic component, at 1,747,425 to 1,748,228
_1663
Dsui_1664: Dsui_1664 - putative periplasmic protein, at 1,748,330 to 1,748,854
_1664
Dsui_1665: Dsui_1665 - hypothetical protein, at 1,748,888 to 1,749,547
_1665
Position (kb)
1747
1748
1749 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1746.436 kb on + strand at 1746.805 kb on - strand, within Dsui_1662 at 1746.891 kb on + strand, within Dsui_1662 at 1746.891 kb on + strand at 1746.907 kb on + strand, within Dsui_1662 at 1747.028 kb on + strand at 1747.029 kb on + strand at 1747.047 kb on - strand, within Dsui_1662 at 1747.196 kb on - strand at 1747.326 kb on - strand at 1747.642 kb on - strand, within Dsui_1663 at 1747.690 kb on + strand, within Dsui_1663 at 1747.845 kb on + strand at 1747.880 kb on - strand, within Dsui_1663 at 1747.892 kb on + strand, within Dsui_1663 at 1747.900 kb on - strand, within Dsui_1663 at 1747.939 kb on + strand, within Dsui_1663 at 1747.947 kb on - strand, within Dsui_1663 at 1748.093 kb on - strand, within Dsui_1663 at 1748.116 kb on + strand at 1748.116 kb on + strand at 1748.116 kb on + strand, within Dsui_1663 at 1748.276 kb on - strand at 1748.289 kb on + strand at 1748.290 kb on - strand at 1748.290 kb on - strand at 1748.290 kb on - strand at 1748.290 kb on - strand at 1748.328 kb on + strand at 1748.336 kb on - strand at 1748.341 kb on + strand at 1748.349 kb on - strand at 1748.371 kb on + strand at 1748.439 kb on - strand, within Dsui_1664 at 1748.439 kb on - strand, within Dsui_1664 at 1748.550 kb on - strand, within Dsui_1664 at 1748.564 kb on + strand, within Dsui_1664 at 1748.661 kb on + strand at 1748.735 kb on - strand, within Dsui_1664 at 1748.906 kb on + strand at 1748.935 kb on + strand at 1748.949 kb on - strand at 1749.069 kb on + strand, within Dsui_1665 at 1749.077 kb on - strand, within Dsui_1665 at 1749.154 kb on + strand, within Dsui_1665 at 1749.185 kb on - strand, within Dsui_1665
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 1,746,436 + -0.6 1,746,805 - Dsui_1662 0.66 -1.1 1,746,891 + Dsui_1662 0.73 +0.4 1,746,891 + +0.4 1,746,907 + Dsui_1662 0.74 -1.9 1,747,028 + +0.4 1,747,029 + +0.4 1,747,047 - Dsui_1662 0.84 -0.3 1,747,196 - -0.7 1,747,326 - -0.6 1,747,642 - Dsui_1663 0.27 -0.4 1,747,690 + Dsui_1663 0.33 -2.4 1,747,845 + -0.6 1,747,880 - Dsui_1663 0.57 -0.1 1,747,892 + Dsui_1663 0.58 -1.6 1,747,900 - Dsui_1663 0.59 -0.3 1,747,939 + Dsui_1663 0.64 -0.6 1,747,947 - Dsui_1663 0.65 -0.3 1,748,093 - Dsui_1663 0.83 -0.0 1,748,116 + +0.4 1,748,116 + +0.4 1,748,116 + Dsui_1663 0.86 +0.4 1,748,276 - -0.2 1,748,289 + -1.9 1,748,290 - -0.0 1,748,290 - +0.1 1,748,290 - -0.2 1,748,290 - +0.0 1,748,328 + -2.2 1,748,336 - -0.5 1,748,341 + -1.6 1,748,349 - +0.0 1,748,371 + +0.4 1,748,439 - Dsui_1664 0.21 -0.4 1,748,439 - Dsui_1664 0.21 +0.3 1,748,550 - Dsui_1664 0.42 -0.7 1,748,564 + Dsui_1664 0.45 -1.2 1,748,661 + -0.6 1,748,735 - Dsui_1664 0.77 -0.6 1,748,906 + +0.4 1,748,935 + -2.4 1,748,949 - -0.2 1,749,069 + Dsui_1665 0.27 +0.4 1,749,077 - Dsui_1665 0.29 -0.1 1,749,154 + Dsui_1665 0.40 -2.9 1,749,185 - Dsui_1665 0.45 -0.1
Or see this region's nucleotide sequence