Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1644 and Dsui_1645 are separated by 10 nucleotides Dsui_1645 and Dsui_1646 are separated by 96 nucleotides Dsui_1646 and Dsui_1647 are separated by 151 nucleotides
Dsui_1644: Dsui_1644 - hypothetical protein, at 1,726,387 to 1,726,773
_1644
Dsui_1645: Dsui_1645 - hemerythrin HHE cation binding domain-containing protein, at 1,726,784 to 1,727,362
_1645
Dsui_1646: Dsui_1646 - cAMP-binding protein, at 1,727,459 to 1,728,205
_1646
Dsui_1647: Dsui_1647 - oxygen-independent coproporphyrinogen III oxidase, at 1,728,357 to 1,729,754
_1647
Position (kb)
1727
1728
1729 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1726.547 kb on - strand, within Dsui_1644 at 1726.598 kb on - strand, within Dsui_1644 at 1726.609 kb on + strand, within Dsui_1644 at 1726.665 kb on + strand, within Dsui_1644 at 1726.699 kb on + strand, within Dsui_1644 at 1726.740 kb on - strand at 1726.796 kb on - strand at 1726.898 kb on - strand, within Dsui_1645 at 1726.946 kb on - strand, within Dsui_1645 at 1727.089 kb on + strand, within Dsui_1645 at 1727.114 kb on + strand, within Dsui_1645 at 1727.151 kb on - strand, within Dsui_1645 at 1727.186 kb on + strand, within Dsui_1645 at 1727.357 kb on + strand at 1727.357 kb on + strand at 1727.357 kb on + strand at 1727.374 kb on + strand at 1727.374 kb on + strand at 1727.382 kb on - strand at 1727.382 kb on - strand at 1727.382 kb on - strand at 1727.382 kb on - strand at 1727.382 kb on - strand at 1727.382 kb on - strand at 1727.387 kb on - strand at 1727.419 kb on + strand at 1727.422 kb on + strand at 1727.467 kb on + strand at 1727.467 kb on + strand at 1727.471 kb on - strand at 1727.475 kb on + strand at 1727.619 kb on + strand at 1727.629 kb on + strand, within Dsui_1646 at 1727.726 kb on - strand, within Dsui_1646 at 1727.737 kb on - strand, within Dsui_1646 at 1727.924 kb on - strand, within Dsui_1646 at 1727.981 kb on - strand, within Dsui_1646 at 1728.005 kb on - strand, within Dsui_1646 at 1728.027 kb on + strand, within Dsui_1646 at 1728.096 kb on + strand, within Dsui_1646 at 1728.228 kb on - strand at 1728.235 kb on + strand at 1728.239 kb on + strand at 1728.271 kb on + strand at 1728.322 kb on + strand at 1728.489 kb on - strand at 1728.542 kb on + strand, within Dsui_1647 at 1728.557 kb on + strand, within Dsui_1647 at 1728.557 kb on + strand, within Dsui_1647 at 1728.647 kb on + strand, within Dsui_1647 at 1728.796 kb on + strand, within Dsui_1647 at 1728.844 kb on + strand, within Dsui_1647 at 1728.852 kb on - strand at 1728.867 kb on + strand, within Dsui_1647 at 1728.873 kb on + strand, within Dsui_1647 at 1729.072 kb on - strand at 1729.085 kb on + strand, within Dsui_1647
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 1,726,547 - Dsui_1644 0.41 -0.6 1,726,598 - Dsui_1644 0.55 -0.6 1,726,609 + Dsui_1644 0.57 -1.7 1,726,665 + Dsui_1644 0.72 -2.1 1,726,699 + Dsui_1644 0.81 +1.2 1,726,740 - -3.7 1,726,796 - +0.4 1,726,898 - Dsui_1645 0.20 +0.4 1,726,946 - Dsui_1645 0.28 +0.4 1,727,089 + Dsui_1645 0.53 -0.4 1,727,114 + Dsui_1645 0.57 -2.0 1,727,151 - Dsui_1645 0.63 -0.6 1,727,186 + Dsui_1645 0.69 +0.2 1,727,357 + -1.6 1,727,357 + -2.2 1,727,357 + -1.4 1,727,374 + -2.2 1,727,374 + -1.2 1,727,382 - -1.9 1,727,382 - -1.2 1,727,382 - -1.2 1,727,382 - +0.4 1,727,382 - -1.6 1,727,382 - +0.4 1,727,387 - -3.4 1,727,419 + -0.4 1,727,422 + -1.8 1,727,467 + -0.6 1,727,467 + -0.6 1,727,471 - -0.1 1,727,475 + -1.2 1,727,619 + +0.4 1,727,629 + Dsui_1646 0.23 +0.4 1,727,726 - Dsui_1646 0.36 +0.0 1,727,737 - Dsui_1646 0.37 +0.1 1,727,924 - Dsui_1646 0.62 +0.1 1,727,981 - Dsui_1646 0.70 -0.0 1,728,005 - Dsui_1646 0.73 -0.0 1,728,027 + Dsui_1646 0.76 -0.6 1,728,096 + Dsui_1646 0.85 -0.6 1,728,228 - +0.0 1,728,235 + -0.6 1,728,239 + -2.2 1,728,271 + -0.6 1,728,322 + -0.6 1,728,489 - -0.1 1,728,542 + Dsui_1647 0.13 +0.1 1,728,557 + Dsui_1647 0.14 -1.2 1,728,557 + Dsui_1647 0.14 -1.0 1,728,647 + Dsui_1647 0.21 -0.5 1,728,796 + Dsui_1647 0.31 -0.2 1,728,844 + Dsui_1647 0.35 -0.8 1,728,852 - -0.6 1,728,867 + Dsui_1647 0.36 -0.3 1,728,873 + Dsui_1647 0.37 -0.2 1,729,072 - -1.2 1,729,085 + Dsui_1647 0.52 -0.3
Or see this region's nucleotide sequence