Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1606 and Dsui_1607 are separated by 102 nucleotides Dsui_1607 and Dsui_1608 are separated by 63 nucleotides Dsui_1608 and Dsui_1609 are separated by 49 nucleotides
Dsui_1606: Dsui_1606 - periplasmic serine protease, Do/DeqQ family, at 1,689,759 to 1,691,252
_1606
Dsui_1607: Dsui_1607 - putative membrane-associated protein, at 1,691,355 to 1,692,332
_1607
Dsui_1608: Dsui_1608 - hypothetical protein, at 1,692,396 to 1,692,704
_1608
Dsui_1609: Dsui_1609 - Thiopurine S-methyltransferase (TPMT), at 1,692,754 to 1,693,371
_1609
Position (kb)
1691
1692
1693 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1690.394 kb on - strand at 1690.434 kb on - strand, within Dsui_1606 at 1690.711 kb on + strand, within Dsui_1606 at 1690.837 kb on + strand, within Dsui_1606 at 1690.856 kb on + strand, within Dsui_1606 at 1690.997 kb on + strand, within Dsui_1606 at 1691.048 kb on - strand at 1691.208 kb on - strand at 1691.262 kb on + strand at 1691.270 kb on - strand at 1691.324 kb on + strand at 1691.687 kb on + strand, within Dsui_1607 at 1691.783 kb on - strand, within Dsui_1607 at 1691.936 kb on + strand, within Dsui_1607 at 1691.962 kb on - strand, within Dsui_1607 at 1692.391 kb on + strand at 1692.519 kb on - strand at 1692.589 kb on + strand at 1692.658 kb on + strand at 1692.668 kb on + strand at 1692.758 kb on + strand at 1692.849 kb on - strand, within Dsui_1609 at 1692.929 kb on + strand, within Dsui_1609 at 1692.956 kb on + strand, within Dsui_1609 at 1692.985 kb on + strand, within Dsui_1609 at 1692.985 kb on + strand, within Dsui_1609
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 1,690,394 - +0.4 1,690,434 - Dsui_1606 0.45 -0.6 1,690,711 + Dsui_1606 0.64 +0.1 1,690,837 + Dsui_1606 0.72 -0.4 1,690,856 + Dsui_1606 0.73 -0.3 1,690,997 + Dsui_1606 0.83 -0.6 1,691,048 - +0.4 1,691,208 - -1.2 1,691,262 + -0.8 1,691,270 - +1.4 1,691,324 + -2.2 1,691,687 + Dsui_1607 0.34 -1.2 1,691,783 - Dsui_1607 0.44 -1.2 1,691,936 + Dsui_1607 0.59 -2.8 1,691,962 - Dsui_1607 0.62 -1.2 1,692,391 + -2.4 1,692,519 - +0.4 1,692,589 + -0.6 1,692,658 + +0.4 1,692,668 + +0.4 1,692,758 + -0.6 1,692,849 - Dsui_1609 0.15 -1.6 1,692,929 + Dsui_1609 0.28 -0.6 1,692,956 + Dsui_1609 0.33 +0.4 1,692,985 + Dsui_1609 0.37 -0.6 1,692,985 + Dsui_1609 0.37 +0.4
Or see this region's nucleotide sequence