Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1499 and Dsui_1500 overlap by 11 nucleotides Dsui_1500 and Dsui_1501 are separated by 154 nucleotides
Dsui_1499: Dsui_1499 - hypothetical protein, at 1,562,986 to 1,564,131
_1499
Dsui_1500: Dsui_1500 - thioredoxin, at 1,564,121 to 1,564,561
_1500
Dsui_1501: Dsui_1501 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,564,716 to 1,567,523
_1501
Position (kb)
1564
1565 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1563.122 kb on - strand, within Dsui_1499 at 1563.135 kb on + strand, within Dsui_1499 at 1563.159 kb on + strand, within Dsui_1499 at 1563.162 kb on - strand, within Dsui_1499 at 1563.167 kb on + strand, within Dsui_1499 at 1563.170 kb on + strand, within Dsui_1499 at 1563.170 kb on + strand, within Dsui_1499 at 1563.200 kb on + strand, within Dsui_1499 at 1563.200 kb on + strand, within Dsui_1499 at 1563.250 kb on - strand, within Dsui_1499 at 1563.261 kb on - strand, within Dsui_1499 at 1563.308 kb on - strand, within Dsui_1499 at 1563.341 kb on + strand, within Dsui_1499 at 1563.341 kb on + strand, within Dsui_1499 at 1563.445 kb on - strand, within Dsui_1499 at 1563.485 kb on + strand, within Dsui_1499 at 1563.493 kb on - strand, within Dsui_1499 at 1563.621 kb on - strand, within Dsui_1499 at 1563.681 kb on - strand, within Dsui_1499 at 1563.686 kb on - strand, within Dsui_1499 at 1563.799 kb on + strand, within Dsui_1499 at 1563.961 kb on + strand, within Dsui_1499 at 1563.961 kb on + strand, within Dsui_1499 at 1563.961 kb on + strand, within Dsui_1499 at 1563.961 kb on + strand, within Dsui_1499 at 1563.969 kb on - strand, within Dsui_1499 at 1563.969 kb on - strand, within Dsui_1499 at 1563.979 kb on - strand, within Dsui_1499 at 1563.981 kb on + strand, within Dsui_1499 at 1564.044 kb on + strand at 1564.103 kb on + strand at 1564.111 kb on - strand at 1564.236 kb on - strand, within Dsui_1500 at 1564.390 kb on - strand, within Dsui_1500 at 1564.402 kb on + strand, within Dsui_1500 at 1564.402 kb on + strand, within Dsui_1500 at 1564.419 kb on + strand, within Dsui_1500 at 1564.496 kb on + strand, within Dsui_1500 at 1564.697 kb on + strand at 1564.697 kb on + strand at 1564.705 kb on - strand at 1564.728 kb on + strand at 1564.736 kb on - strand at 1564.736 kb on - strand at 1564.740 kb on + strand at 1564.748 kb on - strand at 1564.809 kb on + strand at 1564.817 kb on - strand at 1564.817 kb on - strand at 1564.846 kb on + strand at 1564.854 kb on - strand at 1564.897 kb on + strand at 1564.914 kb on + strand at 1564.922 kb on - strand at 1565.069 kb on + strand, within Dsui_1501 at 1565.199 kb on + strand, within Dsui_1501 at 1565.199 kb on + strand, within Dsui_1501 at 1565.233 kb on + strand, within Dsui_1501 at 1565.238 kb on + strand, within Dsui_1501 at 1565.243 kb on + strand, within Dsui_1501 at 1565.259 kb on + strand, within Dsui_1501 at 1565.295 kb on - strand, within Dsui_1501 at 1565.426 kb on - strand, within Dsui_1501 at 1565.452 kb on + strand, within Dsui_1501 at 1565.487 kb on - strand, within Dsui_1501 at 1565.529 kb on + strand, within Dsui_1501 at 1565.529 kb on + strand, within Dsui_1501 at 1565.532 kb on - strand, within Dsui_1501 at 1565.560 kb on + strand, within Dsui_1501
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 1,563,122 - Dsui_1499 0.12 -0.5 1,563,135 + Dsui_1499 0.13 -1.2 1,563,159 + Dsui_1499 0.15 -1.3 1,563,162 - Dsui_1499 0.15 -1.8 1,563,167 + Dsui_1499 0.16 -0.5 1,563,170 + Dsui_1499 0.16 -0.2 1,563,170 + Dsui_1499 0.16 -2.1 1,563,200 + Dsui_1499 0.19 -2.8 1,563,200 + Dsui_1499 0.19 -0.5 1,563,250 - Dsui_1499 0.23 +0.1 1,563,261 - Dsui_1499 0.24 +0.5 1,563,308 - Dsui_1499 0.28 +0.5 1,563,341 + Dsui_1499 0.31 +1.9 1,563,341 + Dsui_1499 0.31 -0.9 1,563,445 - Dsui_1499 0.40 +0.5 1,563,485 + Dsui_1499 0.44 -0.5 1,563,493 - Dsui_1499 0.44 -3.1 1,563,621 - Dsui_1499 0.55 +0.5 1,563,681 - Dsui_1499 0.61 +0.5 1,563,686 - Dsui_1499 0.61 -0.4 1,563,799 + Dsui_1499 0.71 -0.4 1,563,961 + Dsui_1499 0.85 -0.1 1,563,961 + Dsui_1499 0.85 -0.6 1,563,961 + Dsui_1499 0.85 -0.6 1,563,961 + Dsui_1499 0.85 -0.2 1,563,969 - Dsui_1499 0.86 +0.5 1,563,969 - Dsui_1499 0.86 -0.5 1,563,979 - Dsui_1499 0.87 +0.5 1,563,981 + Dsui_1499 0.87 -2.2 1,564,044 + +0.2 1,564,103 + -0.5 1,564,111 - -1.8 1,564,236 - Dsui_1500 0.26 -0.5 1,564,390 - Dsui_1500 0.61 -2.9 1,564,402 + Dsui_1500 0.64 -0.7 1,564,402 + Dsui_1500 0.64 -0.4 1,564,419 + Dsui_1500 0.68 -1.2 1,564,496 + Dsui_1500 0.85 -0.4 1,564,697 + -1.2 1,564,697 + -0.3 1,564,705 - +0.0 1,564,728 + -1.1 1,564,736 - -1.5 1,564,736 - -3.2 1,564,740 + -0.2 1,564,748 - -1.6 1,564,809 + -0.9 1,564,817 - -1.3 1,564,817 - +0.5 1,564,846 + -0.1 1,564,854 - +0.5 1,564,897 + -2.1 1,564,914 + -1.3 1,564,922 - -0.6 1,565,069 + Dsui_1501 0.13 -0.2 1,565,199 + Dsui_1501 0.17 -0.6 1,565,199 + Dsui_1501 0.17 -0.9 1,565,233 + Dsui_1501 0.18 -1.2 1,565,238 + Dsui_1501 0.19 -0.3 1,565,243 + Dsui_1501 0.19 -1.0 1,565,259 + Dsui_1501 0.19 -0.8 1,565,295 - Dsui_1501 0.21 -1.8 1,565,426 - Dsui_1501 0.25 -2.1 1,565,452 + Dsui_1501 0.26 -2.3 1,565,487 - Dsui_1501 0.27 +0.5 1,565,529 + Dsui_1501 0.29 -0.2 1,565,529 + Dsui_1501 0.29 -0.6 1,565,532 - Dsui_1501 0.29 -0.5 1,565,560 + Dsui_1501 0.30 +0.5
Or see this region's nucleotide sequence