Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1460 and Dsui_1461 are separated by 219 nucleotides Dsui_1461 and Dsui_1462 overlap by 4 nucleotides Dsui_1462 and Dsui_1463 are separated by 107 nucleotides
Dsui_1460: Dsui_1460 - cAMP-binding protein, at 1,519,517 to 1,520,209
_1460
Dsui_1461: Dsui_1461 - RND family efflux transporter, MFP subunit, at 1,520,429 to 1,521,598
_1461
Dsui_1462: Dsui_1462 - ABC-type antimicrobial peptide transport system, ATPase component, at 1,521,595 to 1,522,398
_1462
Dsui_1463: Dsui_1463 - transcriptional activator of acetoin/glycerol metabolism, at 1,522,506 to 1,524,446
_1463
Position (kb)
1520
1521
1522 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1519.515 kb on + strand at 1519.530 kb on - strand at 1519.636 kb on + strand, within Dsui_1460 at 1519.679 kb on - strand, within Dsui_1460 at 1519.764 kb on + strand at 1519.770 kb on - strand, within Dsui_1460 at 1519.770 kb on - strand, within Dsui_1460 at 1519.800 kb on - strand, within Dsui_1460 at 1519.869 kb on + strand, within Dsui_1460 at 1519.888 kb on - strand, within Dsui_1460 at 1519.903 kb on + strand, within Dsui_1460 at 1519.907 kb on - strand, within Dsui_1460 at 1519.920 kb on + strand, within Dsui_1460 at 1519.926 kb on + strand at 1519.928 kb on - strand, within Dsui_1460 at 1519.940 kb on + strand at 1519.948 kb on - strand, within Dsui_1460 at 1519.948 kb on - strand, within Dsui_1460 at 1519.959 kb on + strand, within Dsui_1460 at 1519.963 kb on + strand at 1519.966 kb on - strand, within Dsui_1460 at 1519.966 kb on - strand, within Dsui_1460 at 1519.966 kb on - strand, within Dsui_1460 at 1519.967 kb on - strand, within Dsui_1460 at 1519.997 kb on + strand, within Dsui_1460 at 1520.005 kb on - strand, within Dsui_1460 at 1520.027 kb on - strand, within Dsui_1460 at 1520.044 kb on + strand, within Dsui_1460 at 1520.252 kb on + strand at 1520.258 kb on - strand at 1520.258 kb on - strand at 1520.273 kb on + strand at 1520.363 kb on - strand at 1520.426 kb on + strand at 1520.439 kb on - strand at 1520.439 kb on - strand at 1520.622 kb on + strand, within Dsui_1461 at 1520.627 kb on + strand, within Dsui_1461 at 1520.628 kb on - strand, within Dsui_1461 at 1520.630 kb on - strand, within Dsui_1461 at 1520.635 kb on - strand at 1520.714 kb on - strand at 1520.779 kb on + strand, within Dsui_1461 at 1520.787 kb on - strand, within Dsui_1461 at 1520.851 kb on + strand, within Dsui_1461 at 1520.951 kb on + strand, within Dsui_1461 at 1520.995 kb on - strand, within Dsui_1461 at 1521.016 kb on - strand, within Dsui_1461 at 1521.036 kb on - strand at 1521.128 kb on - strand, within Dsui_1461 at 1521.145 kb on - strand, within Dsui_1461 at 1521.147 kb on + strand, within Dsui_1461 at 1521.163 kb on + strand, within Dsui_1461 at 1521.170 kb on - strand, within Dsui_1461 at 1521.272 kb on + strand, within Dsui_1461 at 1521.360 kb on - strand, within Dsui_1461 at 1521.396 kb on + strand, within Dsui_1461 at 1521.577 kb on + strand at 1521.869 kb on + strand, within Dsui_1462 at 1522.292 kb on - strand, within Dsui_1462 at 1522.530 kb on + strand at 1522.558 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 1,519,515 + -2.1 1,519,530 - -0.1 1,519,636 + Dsui_1460 0.17 -2.7 1,519,679 - Dsui_1460 0.23 +0.9 1,519,764 + +0.5 1,519,770 - Dsui_1460 0.37 +0.3 1,519,770 - Dsui_1460 0.37 +0.4 1,519,800 - Dsui_1460 0.41 +0.4 1,519,869 + Dsui_1460 0.51 -1.1 1,519,888 - Dsui_1460 0.54 +0.5 1,519,903 + Dsui_1460 0.56 -2.7 1,519,907 - Dsui_1460 0.56 +0.4 1,519,920 + Dsui_1460 0.58 -1.5 1,519,926 + +0.5 1,519,928 - Dsui_1460 0.59 +0.5 1,519,940 + +0.5 1,519,948 - Dsui_1460 0.62 +0.5 1,519,948 - Dsui_1460 0.62 +0.5 1,519,959 + Dsui_1460 0.64 +0.5 1,519,963 + +0.5 1,519,966 - Dsui_1460 0.65 +0.4 1,519,966 - Dsui_1460 0.65 +0.5 1,519,966 - Dsui_1460 0.65 +0.8 1,519,967 - Dsui_1460 0.65 +0.5 1,519,997 + Dsui_1460 0.69 +0.5 1,520,005 - Dsui_1460 0.70 +0.2 1,520,027 - Dsui_1460 0.74 +0.9 1,520,044 + Dsui_1460 0.76 -1.5 1,520,252 + +0.5 1,520,258 - +0.5 1,520,258 - +0.5 1,520,273 + -2.1 1,520,363 - +0.5 1,520,426 + +0.5 1,520,439 - +0.5 1,520,439 - +0.5 1,520,622 + Dsui_1461 0.16 -0.2 1,520,627 + Dsui_1461 0.17 -0.5 1,520,628 - Dsui_1461 0.17 -1.5 1,520,630 - Dsui_1461 0.17 -2.5 1,520,635 - +0.5 1,520,714 - -0.5 1,520,779 + Dsui_1461 0.30 -0.1 1,520,787 - Dsui_1461 0.31 -3.3 1,520,851 + Dsui_1461 0.36 +0.4 1,520,951 + Dsui_1461 0.45 -0.2 1,520,995 - Dsui_1461 0.48 +0.5 1,521,016 - Dsui_1461 0.50 -1.8 1,521,036 - +0.5 1,521,128 - Dsui_1461 0.60 -1.1 1,521,145 - Dsui_1461 0.61 -1.5 1,521,147 + Dsui_1461 0.61 -1.6 1,521,163 + Dsui_1461 0.63 -0.9 1,521,170 - Dsui_1461 0.63 -0.5 1,521,272 + Dsui_1461 0.72 -0.1 1,521,360 - Dsui_1461 0.80 +0.5 1,521,396 + Dsui_1461 0.83 -2.0 1,521,577 + -0.3 1,521,869 + Dsui_1462 0.34 -0.6 1,522,292 - Dsui_1462 0.87 -0.5 1,522,530 + +0.5 1,522,558 - -1.1
Or see this region's nucleotide sequence