Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1450 and Dsui_1451 are separated by 22 nucleotides Dsui_1451 and Dsui_1452 are separated by 43 nucleotides Dsui_1452 and Dsui_1453 are separated by 13 nucleotides Dsui_1453 and Dsui_1454 are separated by 7 nucleotides
Dsui_1450: Dsui_1450 - serine/threonine protein phosphatase, at 1,507,015 to 1,507,842
_1450
Dsui_1451: Dsui_1451 - FHA domain-containing protein, at 1,507,865 to 1,508,593
_1451
Dsui_1452: Dsui_1452 - putative transmembrane sensor domain protein, at 1,508,637 to 1,510,850
_1452
Dsui_1453: Dsui_1453 - metal-dependent hydrolase, beta-lactamase superfamily III, at 1,510,864 to 1,511,637
_1453
Dsui_1454: Dsui_1454 - Rhodanese-like protein,cyclic nucleotide-binding protein, at 1,511,645 to 1,512,727
_1454
Position (kb)
1508
1509
1510
1511 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1507.855 kb on + strand at 1507.863 kb on - strand at 1507.969 kb on - strand, within Dsui_1451 at 1508.005 kb on + strand, within Dsui_1451 at 1508.036 kb on + strand, within Dsui_1451 at 1508.036 kb on + strand, within Dsui_1451 at 1508.041 kb on + strand, within Dsui_1451 at 1508.058 kb on - strand at 1508.410 kb on - strand, within Dsui_1451 at 1508.587 kb on + strand at 1508.682 kb on - strand at 1508.689 kb on + strand at 1508.697 kb on - strand at 1509.164 kb on - strand, within Dsui_1452 at 1509.493 kb on + strand, within Dsui_1452 at 1509.706 kb on - strand, within Dsui_1452 at 1509.758 kb on - strand, within Dsui_1452 at 1509.837 kb on - strand, within Dsui_1452 at 1509.853 kb on + strand, within Dsui_1452 at 1509.860 kb on - strand at 1509.862 kb on - strand, within Dsui_1452 at 1509.892 kb on - strand at 1510.062 kb on - strand, within Dsui_1452 at 1510.077 kb on - strand, within Dsui_1452 at 1510.197 kb on + strand, within Dsui_1452 at 1510.215 kb on - strand, within Dsui_1452 at 1510.232 kb on + strand, within Dsui_1452 at 1510.251 kb on - strand at 1510.314 kb on + strand, within Dsui_1452 at 1510.344 kb on + strand, within Dsui_1452 at 1510.430 kb on + strand, within Dsui_1452 at 1510.430 kb on + strand at 1510.487 kb on - strand, within Dsui_1452 at 1510.566 kb on - strand, within Dsui_1452 at 1510.580 kb on + strand, within Dsui_1452 at 1510.619 kb on - strand at 1510.642 kb on - strand at 1510.642 kb on - strand at 1510.682 kb on - strand at 1510.922 kb on + strand at 1510.922 kb on + strand at 1510.930 kb on - strand at 1510.930 kb on - strand at 1510.930 kb on - strand at 1511.021 kb on + strand, within Dsui_1453 at 1511.104 kb on + strand, within Dsui_1453 at 1511.190 kb on - strand at 1511.237 kb on + strand, within Dsui_1453 at 1511.237 kb on + strand, within Dsui_1453 at 1511.281 kb on + strand, within Dsui_1453 at 1511.380 kb on - strand, within Dsui_1453 at 1511.442 kb on + strand, within Dsui_1453 at 1511.474 kb on - strand, within Dsui_1453 at 1511.535 kb on + strand, within Dsui_1453 at 1511.630 kb on - strand at 1511.666 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 1,507,855 + -2.3 1,507,863 - +0.4 1,507,969 - Dsui_1451 0.14 +0.4 1,508,005 + Dsui_1451 0.19 -0.6 1,508,036 + Dsui_1451 0.23 +0.2 1,508,036 + Dsui_1451 0.23 -0.4 1,508,041 + Dsui_1451 0.24 -0.9 1,508,058 - +0.4 1,508,410 - Dsui_1451 0.75 -1.2 1,508,587 + -0.9 1,508,682 - +0.4 1,508,689 + -1.0 1,508,697 - -0.6 1,509,164 - Dsui_1452 0.24 -1.6 1,509,493 + Dsui_1452 0.39 -1.4 1,509,706 - Dsui_1452 0.48 -0.6 1,509,758 - Dsui_1452 0.51 -2.1 1,509,837 - Dsui_1452 0.54 -0.6 1,509,853 + Dsui_1452 0.55 -0.6 1,509,860 - +0.4 1,509,862 - Dsui_1452 0.55 +0.4 1,509,892 - +0.4 1,510,062 - Dsui_1452 0.64 -1.1 1,510,077 - Dsui_1452 0.65 -0.6 1,510,197 + Dsui_1452 0.70 -1.6 1,510,215 - Dsui_1452 0.71 -0.6 1,510,232 + Dsui_1452 0.72 -1.6 1,510,251 - +0.4 1,510,314 + Dsui_1452 0.76 -1.3 1,510,344 + Dsui_1452 0.77 -1.3 1,510,430 + Dsui_1452 0.81 +0.4 1,510,430 + -1.1 1,510,487 - Dsui_1452 0.84 -2.7 1,510,566 - Dsui_1452 0.87 -0.1 1,510,580 + Dsui_1452 0.88 -1.3 1,510,619 - +0.4 1,510,642 - -3.7 1,510,642 - -0.6 1,510,682 - -0.6 1,510,922 + -2.3 1,510,922 + +0.4 1,510,930 - -0.6 1,510,930 - -0.6 1,510,930 - -1.6 1,511,021 + Dsui_1453 0.20 -1.6 1,511,104 + Dsui_1453 0.31 -2.1 1,511,190 - +0.4 1,511,237 + Dsui_1453 0.48 -3.0 1,511,237 + Dsui_1453 0.48 -1.1 1,511,281 + Dsui_1453 0.54 -2.3 1,511,380 - Dsui_1453 0.67 +0.4 1,511,442 + Dsui_1453 0.75 -0.8 1,511,474 - Dsui_1453 0.79 +0.4 1,511,535 + Dsui_1453 0.87 -3.2 1,511,630 - +0.4 1,511,666 + -0.7
Or see this region's nucleotide sequence