Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1442 and Dsui_1443 are separated by 96 nucleotides Dsui_1443 and Dsui_1444 are separated by 233 nucleotides Dsui_1444 and Dsui_1445 are separated by 51 nucleotides
Dsui_1442: Dsui_1442 - putative efflux protein, MATE family, at 1,496,678 to 1,498,042
_1442
Dsui_1443: Dsui_1443 - phenylacetate-CoA ligase, at 1,498,139 to 1,499,455
_1443
Dsui_1444: Dsui_1444 - Protein of unknown function (DUF2889), at 1,499,689 to 1,500,240
_1444
Dsui_1445: Dsui_1445 - succinyl-CoA synthetase, beta subunit, at 1,500,292 to 1,501,452
_1445
Position (kb)
1498
1499
1500 Strain fitness (log2 ratio)
-2
-1
0
1 at 1497.159 kb on - strand at 1497.430 kb on + strand, within Dsui_1442 at 1497.465 kb on + strand at 1497.528 kb on - strand at 1497.558 kb on - strand at 1497.729 kb on - strand, within Dsui_1442 at 1498.022 kb on - strand at 1498.104 kb on - strand at 1498.240 kb on - strand at 1498.274 kb on - strand, within Dsui_1443 at 1498.578 kb on + strand, within Dsui_1443 at 1498.607 kb on + strand, within Dsui_1443 at 1498.649 kb on + strand, within Dsui_1443 at 1498.791 kb on + strand, within Dsui_1443 at 1498.825 kb on + strand, within Dsui_1443 at 1498.833 kb on - strand, within Dsui_1443 at 1499.021 kb on + strand, within Dsui_1443 at 1499.251 kb on + strand, within Dsui_1443 at 1499.277 kb on + strand, within Dsui_1443 at 1499.331 kb on - strand at 1499.662 kb on - strand at 1499.828 kb on + strand, within Dsui_1444 at 1499.864 kb on + strand, within Dsui_1444 at 1499.929 kb on + strand, within Dsui_1444 at 1499.939 kb on + strand, within Dsui_1444 at 1499.939 kb on + strand, within Dsui_1444 at 1499.939 kb on + strand, within Dsui_1444 at 1499.939 kb on + strand, within Dsui_1444 at 1499.968 kb on + strand, within Dsui_1444 at 1499.968 kb on + strand, within Dsui_1444 at 1499.976 kb on - strand at 1499.976 kb on - strand, within Dsui_1444 at 1499.986 kb on + strand, within Dsui_1444 at 1499.987 kb on + strand, within Dsui_1444 at 1500.040 kb on + strand, within Dsui_1444 at 1500.040 kb on + strand, within Dsui_1444 at 1500.058 kb on - strand, within Dsui_1444 at 1500.058 kb on - strand, within Dsui_1444 at 1500.069 kb on + strand, within Dsui_1444 at 1500.102 kb on - strand at 1500.193 kb on + strand at 1500.201 kb on - strand at 1500.201 kb on - strand at 1500.243 kb on - strand at 1500.249 kb on + strand at 1500.249 kb on + strand at 1500.312 kb on + strand at 1500.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 1,497,159 - -1.6 1,497,430 + Dsui_1442 0.55 -1.9 1,497,465 + +0.4 1,497,528 - -1.2 1,497,558 - +1.0 1,497,729 - Dsui_1442 0.77 -0.6 1,498,022 - -0.6 1,498,104 - +0.4 1,498,240 - -1.2 1,498,274 - Dsui_1443 0.10 -0.6 1,498,578 + Dsui_1443 0.33 -1.2 1,498,607 + Dsui_1443 0.36 -1.6 1,498,649 + Dsui_1443 0.39 -2.6 1,498,791 + Dsui_1443 0.50 +0.4 1,498,825 + Dsui_1443 0.52 +0.4 1,498,833 - Dsui_1443 0.53 -0.6 1,499,021 + Dsui_1443 0.67 +0.4 1,499,251 + Dsui_1443 0.84 +0.4 1,499,277 + Dsui_1443 0.86 -0.9 1,499,331 - -1.2 1,499,662 - -0.6 1,499,828 + Dsui_1444 0.25 -0.4 1,499,864 + Dsui_1444 0.32 -0.5 1,499,929 + Dsui_1444 0.43 +0.1 1,499,939 + Dsui_1444 0.45 -0.3 1,499,939 + Dsui_1444 0.45 -0.2 1,499,939 + Dsui_1444 0.45 +0.2 1,499,939 + Dsui_1444 0.45 -0.2 1,499,968 + Dsui_1444 0.51 +0.0 1,499,968 + Dsui_1444 0.51 -0.1 1,499,976 - +0.4 1,499,976 - Dsui_1444 0.52 +0.4 1,499,986 + Dsui_1444 0.54 -0.1 1,499,987 + Dsui_1444 0.54 -0.3 1,500,040 + Dsui_1444 0.64 -0.0 1,500,040 + Dsui_1444 0.64 -0.3 1,500,058 - Dsui_1444 0.67 -1.2 1,500,058 - Dsui_1444 0.67 -1.6 1,500,069 + Dsui_1444 0.69 -0.3 1,500,102 - +0.4 1,500,193 + -0.3 1,500,201 - +0.4 1,500,201 - -1.2 1,500,243 - -1.6 1,500,249 + -1.4 1,500,249 + +0.2 1,500,312 + -0.9 1,500,362 - -1.2
Or see this region's nucleotide sequence