Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1288 and Dsui_1289 are separated by 9 nucleotides Dsui_1289 and Dsui_1290 overlap by 4 nucleotides Dsui_1290 and Dsui_1291 are separated by 17 nucleotides
Dsui_1288: Dsui_1288 - hypothetical protein, at 1,351,549 to 1,352,496
_1288
Dsui_1289: Dsui_1289 - hypothetical protein, at 1,352,506 to 1,353,204
_1289
Dsui_1290: Dsui_1290 - hypothetical protein, at 1,353,201 to 1,353,854
_1290
Dsui_1291: Dsui_1291 - hypothetical protein, at 1,353,872 to 1,354,240
_1291
Position (kb)
1352
1353
1354 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1351.571 kb on + strand at 1351.579 kb on - strand at 1351.579 kb on - strand at 1351.650 kb on - strand, within Dsui_1288 at 1351.706 kb on - strand, within Dsui_1288 at 1351.706 kb on - strand, within Dsui_1288 at 1351.737 kb on - strand, within Dsui_1288 at 1351.808 kb on - strand, within Dsui_1288 at 1351.863 kb on - strand, within Dsui_1288 at 1351.869 kb on + strand, within Dsui_1288 at 1351.884 kb on + strand, within Dsui_1288 at 1351.884 kb on + strand, within Dsui_1288 at 1351.906 kb on + strand, within Dsui_1288 at 1351.907 kb on + strand, within Dsui_1288 at 1351.982 kb on + strand, within Dsui_1288 at 1352.062 kb on - strand, within Dsui_1288 at 1352.118 kb on - strand, within Dsui_1288 at 1352.153 kb on - strand, within Dsui_1288 at 1352.160 kb on - strand, within Dsui_1288 at 1352.170 kb on - strand, within Dsui_1288 at 1352.292 kb on + strand, within Dsui_1288 at 1352.292 kb on + strand, within Dsui_1288 at 1352.324 kb on - strand, within Dsui_1288 at 1352.339 kb on + strand, within Dsui_1288 at 1352.354 kb on + strand, within Dsui_1288 at 1352.354 kb on + strand, within Dsui_1288 at 1352.355 kb on - strand, within Dsui_1288 at 1352.362 kb on - strand, within Dsui_1288 at 1352.368 kb on - strand, within Dsui_1288 at 1352.428 kb on + strand at 1352.460 kb on - strand at 1352.465 kb on - strand at 1352.490 kb on + strand at 1352.498 kb on - strand at 1352.498 kb on - strand at 1352.503 kb on + strand at 1352.623 kb on + strand, within Dsui_1289 at 1352.638 kb on + strand, within Dsui_1289 at 1352.661 kb on + strand, within Dsui_1289 at 1352.661 kb on + strand, within Dsui_1289 at 1352.661 kb on + strand, within Dsui_1289 at 1352.661 kb on + strand, within Dsui_1289 at 1352.661 kb on + strand, within Dsui_1289 at 1352.661 kb on + strand, within Dsui_1289 at 1352.661 kb on + strand, within Dsui_1289 at 1352.664 kb on - strand, within Dsui_1289 at 1352.669 kb on - strand, within Dsui_1289 at 1352.669 kb on - strand, within Dsui_1289 at 1352.669 kb on - strand, within Dsui_1289 at 1352.669 kb on - strand, within Dsui_1289 at 1352.811 kb on - strand, within Dsui_1289 at 1352.826 kb on - strand, within Dsui_1289 at 1352.831 kb on - strand, within Dsui_1289 at 1352.838 kb on + strand, within Dsui_1289 at 1352.885 kb on + strand, within Dsui_1289 at 1352.914 kb on - strand, within Dsui_1289 at 1352.925 kb on + strand, within Dsui_1289 at 1352.933 kb on - strand, within Dsui_1289 at 1352.971 kb on - strand, within Dsui_1289 at 1352.991 kb on + strand, within Dsui_1289 at 1353.072 kb on + strand, within Dsui_1289 at 1353.097 kb on - strand, within Dsui_1289 at 1353.097 kb on - strand, within Dsui_1289 at 1353.183 kb on + strand at 1353.191 kb on - strand at 1353.233 kb on + strand at 1353.240 kb on - strand at 1353.240 kb on - strand at 1353.309 kb on + strand, within Dsui_1290 at 1353.317 kb on - strand, within Dsui_1290 at 1353.352 kb on - strand, within Dsui_1290 at 1353.376 kb on - strand, within Dsui_1290 at 1353.388 kb on + strand, within Dsui_1290 at 1353.401 kb on + strand, within Dsui_1290 at 1353.409 kb on - strand, within Dsui_1290 at 1353.409 kb on - strand, within Dsui_1290 at 1353.409 kb on - strand, within Dsui_1290 at 1353.492 kb on - strand, within Dsui_1290 at 1353.535 kb on - strand, within Dsui_1290 at 1353.545 kb on - strand, within Dsui_1290 at 1353.684 kb on + strand, within Dsui_1290 at 1353.726 kb on + strand, within Dsui_1290 at 1353.776 kb on - strand, within Dsui_1290 at 1353.820 kb on + strand at 1353.820 kb on - strand at 1353.830 kb on + strand at 1353.838 kb on - strand at 1353.841 kb on + strand at 1353.874 kb on + strand at 1353.874 kb on + strand at 1353.880 kb on - strand at 1353.882 kb on - strand at 1353.906 kb on - strand at 1353.916 kb on + strand, within Dsui_1291 at 1353.928 kb on + strand, within Dsui_1291 at 1353.928 kb on + strand, within Dsui_1291 at 1353.936 kb on - strand, within Dsui_1291 at 1353.991 kb on + strand, within Dsui_1291 at 1354.069 kb on - strand, within Dsui_1291 at 1354.105 kb on + strand, within Dsui_1291 at 1354.132 kb on - strand, within Dsui_1291 at 1354.134 kb on + strand, within Dsui_1291 at 1354.134 kb on + strand, within Dsui_1291 at 1354.134 kb on + strand, within Dsui_1291 at 1354.142 kb on - strand, within Dsui_1291 at 1354.151 kb on + strand, within Dsui_1291
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 1,351,571 + -0.0 1,351,579 - -1.7 1,351,579 - +0.3 1,351,650 - Dsui_1288 0.11 +0.3 1,351,706 - Dsui_1288 0.17 +0.3 1,351,706 - Dsui_1288 0.17 +0.3 1,351,737 - Dsui_1288 0.20 +0.3 1,351,808 - Dsui_1288 0.27 -0.7 1,351,863 - Dsui_1288 0.33 -0.7 1,351,869 + Dsui_1288 0.34 +0.0 1,351,884 + Dsui_1288 0.35 -0.3 1,351,884 + Dsui_1288 0.35 +0.1 1,351,906 + Dsui_1288 0.38 -0.1 1,351,907 + Dsui_1288 0.38 -0.1 1,351,982 + Dsui_1288 0.46 -0.1 1,352,062 - Dsui_1288 0.54 -1.7 1,352,118 - Dsui_1288 0.60 -2.0 1,352,153 - Dsui_1288 0.64 +0.3 1,352,160 - Dsui_1288 0.64 +0.3 1,352,170 - Dsui_1288 0.66 -1.3 1,352,292 + Dsui_1288 0.78 -0.3 1,352,292 + Dsui_1288 0.78 -0.1 1,352,324 - Dsui_1288 0.82 -2.7 1,352,339 + Dsui_1288 0.83 -0.1 1,352,354 + Dsui_1288 0.85 +0.5 1,352,354 + Dsui_1288 0.85 -0.0 1,352,355 - Dsui_1288 0.85 +0.3 1,352,362 - Dsui_1288 0.86 -3.5 1,352,368 - Dsui_1288 0.86 -2.7 1,352,428 + -0.0 1,352,460 - -1.7 1,352,465 - +1.3 1,352,490 + -0.4 1,352,498 - -1.7 1,352,498 - +0.3 1,352,503 + -0.2 1,352,623 + Dsui_1289 0.17 +0.4 1,352,638 + Dsui_1289 0.19 -0.0 1,352,661 + Dsui_1289 0.22 +0.0 1,352,661 + Dsui_1289 0.22 +0.3 1,352,661 + Dsui_1289 0.22 +0.1 1,352,661 + Dsui_1289 0.22 +0.3 1,352,661 + Dsui_1289 0.22 +0.2 1,352,661 + Dsui_1289 0.22 +0.1 1,352,661 + Dsui_1289 0.22 +0.1 1,352,664 - Dsui_1289 0.23 +0.3 1,352,669 - Dsui_1289 0.23 -1.3 1,352,669 - Dsui_1289 0.23 -1.7 1,352,669 - Dsui_1289 0.23 -0.7 1,352,669 - Dsui_1289 0.23 +0.3 1,352,811 - Dsui_1289 0.44 -1.3 1,352,826 - Dsui_1289 0.46 -2.0 1,352,831 - Dsui_1289 0.46 +0.3 1,352,838 + Dsui_1289 0.47 +0.1 1,352,885 + Dsui_1289 0.54 +0.1 1,352,914 - Dsui_1289 0.58 -1.3 1,352,925 + Dsui_1289 0.60 +0.0 1,352,933 - Dsui_1289 0.61 -0.7 1,352,971 - Dsui_1289 0.67 -3.0 1,352,991 + Dsui_1289 0.69 +0.2 1,353,072 + Dsui_1289 0.81 +0.0 1,353,097 - Dsui_1289 0.85 -0.7 1,353,097 - Dsui_1289 0.85 -1.3 1,353,183 + -0.3 1,353,191 - +0.3 1,353,233 + -0.0 1,353,240 - -1.7 1,353,240 - +0.3 1,353,309 + Dsui_1290 0.17 +0.1 1,353,317 - Dsui_1290 0.18 -0.7 1,353,352 - Dsui_1290 0.23 +0.3 1,353,376 - Dsui_1290 0.27 -3.2 1,353,388 + Dsui_1290 0.29 -0.2 1,353,401 + Dsui_1290 0.31 +0.2 1,353,409 - Dsui_1290 0.32 +0.3 1,353,409 - Dsui_1290 0.32 -0.7 1,353,409 - Dsui_1290 0.32 -0.7 1,353,492 - Dsui_1290 0.44 -2.0 1,353,535 - Dsui_1290 0.51 -1.3 1,353,545 - Dsui_1290 0.53 +0.3 1,353,684 + Dsui_1290 0.74 -0.0 1,353,726 + Dsui_1290 0.80 +0.0 1,353,776 - Dsui_1290 0.88 +0.3 1,353,820 + -0.0 1,353,820 - -2.0 1,353,830 + +0.1 1,353,838 - +0.3 1,353,841 + +0.2 1,353,874 + -0.2 1,353,874 + +0.0 1,353,880 - -0.7 1,353,882 - -0.7 1,353,906 - +0.3 1,353,916 + Dsui_1291 0.12 -0.2 1,353,928 + Dsui_1291 0.15 -0.3 1,353,928 + Dsui_1291 0.15 -0.1 1,353,936 - Dsui_1291 0.17 -0.7 1,353,991 + Dsui_1291 0.32 +0.3 1,354,069 - Dsui_1291 0.53 -2.0 1,354,105 + Dsui_1291 0.63 -0.5 1,354,132 - Dsui_1291 0.70 -2.5 1,354,134 + Dsui_1291 0.71 -0.1 1,354,134 + Dsui_1291 0.71 -0.5 1,354,134 + Dsui_1291 0.71 +0.3 1,354,142 - Dsui_1291 0.73 +0.3 1,354,151 + Dsui_1291 0.76 +0.1
Or see this region's nucleotide sequence