Strain Fitness in Dechlorosoma suillum PS around Dsui_1049

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1048 and Dsui_1049 are separated by 170 nucleotidesDsui_1049 and Dsui_1050 are separated by 38 nucleotides Dsui_1048: Dsui_1048 - glutamine synthetase, type I, at 1,080,926 to 1,082,338 _1048 Dsui_1049: Dsui_1049 - hypothetical protein, at 1,082,509 to 1,083,009 _1049 Dsui_1050: Dsui_1050 - signal transduction histidine kinase, nitrogen specific, at 1,083,048 to 1,084,103 _1050 Position (kb) 1082 1083 1084Strain fitness (log2 ratio) -2 -1 0 1at 1082.331 kb on + strandat 1082.331 kb on + strandat 1082.432 kb on - strandat 1082.531 kb on + strandat 1082.562 kb on - strand, within Dsui_1049at 1082.616 kb on + strand, within Dsui_1049at 1082.621 kb on + strand, within Dsui_1049at 1082.761 kb on - strand, within Dsui_1049at 1082.823 kb on - strand, within Dsui_1049at 1082.853 kb on - strand, within Dsui_1049at 1082.928 kb on + strand, within Dsui_1049at 1082.970 kb on + strandat 1082.978 kb on - strandat 1082.978 kb on - strandat 1083.039 kb on - strandat 1083.193 kb on + strand, within Dsui_1050at 1083.234 kb on - strand, within Dsui_1050at 1083.245 kb on - strand, within Dsui_1050at 1083.249 kb on + strand, within Dsui_1050at 1083.249 kb on + strandat 1083.249 kb on + strand, within Dsui_1050at 1083.257 kb on - strand, within Dsui_1050at 1083.266 kb on + strand, within Dsui_1050at 1083.266 kb on + strand, within Dsui_1050at 1083.274 kb on - strand, within Dsui_1050at 1083.395 kb on - strand, within Dsui_1050at 1083.406 kb on + strandat 1083.406 kb on + strand, within Dsui_1050at 1083.442 kb on + strand, within Dsui_1050at 1083.450 kb on - strand, within Dsui_1050at 1083.535 kb on + strand, within Dsui_1050at 1083.535 kb on + strand, within Dsui_1050at 1083.538 kb on - strand, within Dsui_1050at 1083.539 kb on - strand, within Dsui_1050at 1083.541 kb on + strand, within Dsui_1050at 1083.543 kb on - strand, within Dsui_1050at 1083.543 kb on - strand, within Dsui_1050at 1083.543 kb on - strand, within Dsui_1050at 1083.555 kb on + strand, within Dsui_1050at 1083.579 kb on - strand, within Dsui_1050at 1083.657 kb on + strand, within Dsui_1050at 1083.666 kb on + strand, within Dsui_1050at 1083.723 kb on + strand, within Dsui_1050at 1083.775 kb on - strand, within Dsui_1050at 1083.775 kb on - strand, within Dsui_1050at 1083.787 kb on - strand, within Dsui_1050at 1083.806 kb on + strand, within Dsui_1050at 1083.822 kb on + strand, within Dsui_1050at 1083.927 kb on + strand, within Dsui_1050

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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1,082,331 + +0.2
1,082,331 + +0.1
1,082,432 - -2.4
1,082,531 + +0.3
1,082,562 - Dsui_1049 0.11 +0.5
1,082,616 + Dsui_1049 0.21 -0.1
1,082,621 + Dsui_1049 0.22 +0.1
1,082,761 - Dsui_1049 0.50 -1.9
1,082,823 - Dsui_1049 0.63 -2.5
1,082,853 - Dsui_1049 0.69 +0.5
1,082,928 + Dsui_1049 0.84 +0.0
1,082,970 + -0.0
1,082,978 - +0.5
1,082,978 - -0.5
1,083,039 - -1.1
1,083,193 + Dsui_1050 0.14 +0.3
1,083,234 - Dsui_1050 0.18 -0.5
1,083,245 - Dsui_1050 0.19 +0.5
1,083,249 + Dsui_1050 0.19 +1.1
1,083,249 + +0.5
1,083,249 + Dsui_1050 0.19 +0.4
1,083,257 - Dsui_1050 0.20 -2.1
1,083,266 + Dsui_1050 0.21 +1.3
1,083,266 + Dsui_1050 0.21 -1.0
1,083,274 - Dsui_1050 0.21 +0.5
1,083,395 - Dsui_1050 0.33 +0.5
1,083,406 + +1.5
1,083,406 + Dsui_1050 0.34 -0.3
1,083,442 + Dsui_1050 0.37 +0.1
1,083,450 - Dsui_1050 0.38 -2.1
1,083,535 + Dsui_1050 0.46 +0.4
1,083,535 + Dsui_1050 0.46 +0.2
1,083,538 - Dsui_1050 0.46 +0.5
1,083,539 - Dsui_1050 0.46 -0.5
1,083,541 + Dsui_1050 0.47 +0.4
1,083,543 - Dsui_1050 0.47 +0.5
1,083,543 - Dsui_1050 0.47 -1.5
1,083,543 - Dsui_1050 0.47 -0.5
1,083,555 + Dsui_1050 0.48 +0.3
1,083,579 - Dsui_1050 0.50 -1.1
1,083,657 + Dsui_1050 0.58 +0.1
1,083,666 + Dsui_1050 0.59 +0.7
1,083,723 + Dsui_1050 0.64 +0.1
1,083,775 - Dsui_1050 0.69 +0.5
1,083,775 - Dsui_1050 0.69 -1.5
1,083,787 - Dsui_1050 0.70 +0.5
1,083,806 + Dsui_1050 0.72 -0.8
1,083,822 + Dsui_1050 0.73 -0.3
1,083,927 + Dsui_1050 0.83 +0.8

Or see this region's nucleotide sequence