Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1041 and Dsui_1042 are separated by 5 nucleotides Dsui_1042 and Dsui_1043 are separated by 87 nucleotides Dsui_1043 and Dsui_1044 are separated by 47 nucleotides
Dsui_1041: Dsui_1041 - phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase, at 1,072,558 to 1,073,718
_1041
Dsui_1042: Dsui_1042 - metal-dependent hydrolase, at 1,073,724 to 1,074,479
_1042
Dsui_1043: Dsui_1043 - quinolinate synthetase complex, A subunit, at 1,074,567 to 1,075,664
_1043
Dsui_1044: Dsui_1044 - hypothetical protein, at 1,075,712 to 1,078,858
_1044
Position (kb)
1074
1075
1076 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1073.672 kb on + strand at 1073.672 kb on + strand at 1073.720 kb on - strand at 1073.726 kb on + strand at 1073.731 kb on + strand at 1073.876 kb on - strand, within Dsui_1042 at 1073.939 kb on + strand, within Dsui_1042 at 1074.303 kb on + strand, within Dsui_1042 at 1074.329 kb on + strand, within Dsui_1042 at 1074.412 kb on - strand at 1074.454 kb on + strand at 1074.462 kb on - strand at 1074.464 kb on + strand at 1074.472 kb on - strand at 1074.497 kb on + strand at 1074.505 kb on + strand at 1074.553 kb on + strand at 1074.561 kb on - strand at 1074.563 kb on - strand at 1075.715 kb on - strand at 1075.761 kb on - strand at 1075.866 kb on + strand at 1075.888 kb on + strand at 1075.888 kb on + strand at 1075.896 kb on - strand at 1075.952 kb on + strand at 1075.993 kb on + strand at 1075.993 kb on + strand at 1076.058 kb on - strand at 1076.162 kb on - strand, within Dsui_1044 at 1076.162 kb on - strand at 1076.230 kb on + strand at 1076.238 kb on - strand, within Dsui_1044 at 1076.240 kb on - strand, within Dsui_1044 at 1076.249 kb on + strand at 1076.336 kb on - strand at 1076.362 kb on + strand at 1076.370 kb on - strand, within Dsui_1044 at 1076.370 kb on - strand, within Dsui_1044 at 1076.392 kb on - strand, within Dsui_1044 at 1076.414 kb on + strand, within Dsui_1044 at 1076.563 kb on + strand at 1076.566 kb on - strand, within Dsui_1044 at 1076.571 kb on - strand, within Dsui_1044 at 1076.592 kb on - strand, within Dsui_1044 at 1076.613 kb on + strand, within Dsui_1044 at 1076.613 kb on + strand, within Dsui_1044 at 1076.621 kb on - strand, within Dsui_1044
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 1,073,672 + +0.5 1,073,672 + -0.5 1,073,720 - +0.2 1,073,726 + -1.1 1,073,731 + -0.5 1,073,876 - Dsui_1042 0.20 -0.3 1,073,939 + Dsui_1042 0.28 +0.5 1,074,303 + Dsui_1042 0.77 -1.1 1,074,329 + Dsui_1042 0.80 -1.8 1,074,412 - -0.3 1,074,454 + -1.1 1,074,462 - -0.6 1,074,464 + +0.5 1,074,472 - -0.2 1,074,497 + -0.5 1,074,505 + -2.2 1,074,553 + +0.2 1,074,561 - +0.0 1,074,563 - +0.1 1,075,715 - -0.1 1,075,761 - -1.1 1,075,866 + +0.5 1,075,888 + +0.5 1,075,888 + -0.5 1,075,896 - -2.8 1,075,952 + -1.1 1,075,993 + -0.5 1,075,993 + -1.5 1,076,058 - +0.5 1,076,162 - Dsui_1044 0.14 -0.5 1,076,162 - -0.5 1,076,230 + +0.5 1,076,238 - Dsui_1044 0.17 -1.5 1,076,240 - Dsui_1044 0.17 -0.5 1,076,249 + -0.5 1,076,336 - +0.5 1,076,362 + +0.5 1,076,370 - Dsui_1044 0.21 -2.8 1,076,370 - Dsui_1044 0.21 -1.1 1,076,392 - Dsui_1044 0.22 +0.5 1,076,414 + Dsui_1044 0.22 -2.7 1,076,563 + +0.5 1,076,566 - Dsui_1044 0.27 -1.1 1,076,571 - Dsui_1044 0.27 -0.5 1,076,592 - Dsui_1044 0.28 -0.5 1,076,613 + Dsui_1044 0.29 -0.5 1,076,613 + Dsui_1044 0.29 +0.5 1,076,621 - Dsui_1044 0.29 -1.5
Or see this region's nucleotide sequence