Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0973 and Dsui_0974 are separated by 85 nucleotides Dsui_0974 and Dsui_0975 are separated by 150 nucleotides Dsui_0975 and Dsui_0976 are separated by 70 nucleotides
Dsui_0973: Dsui_0973 - putative transcriptional regulator, at 999,959 to 1,000,429
_0973
Dsui_0974: Dsui_0974 - hypothetical protein, at 1,000,515 to 1,000,979
_0974
Dsui_0975: Dsui_0975 - acyl-CoA dehydrogenase, at 1,001,130 to 1,002,302
_0975
Dsui_0976: Dsui_0976 - acetyl-CoA acetyltransferase, at 1,002,373 to 1,003,554
_0976
Position (kb)
1001
1002
1003 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1000.172 kb on - strand, within Dsui_0973 at 1000.230 kb on - strand, within Dsui_0973 at 1000.308 kb on - strand, within Dsui_0973 at 1000.363 kb on + strand, within Dsui_0973 at 1000.383 kb on - strand at 1000.682 kb on + strand, within Dsui_0974 at 1000.806 kb on + strand, within Dsui_0974 at 1000.904 kb on + strand, within Dsui_0974 at 1000.919 kb on - strand, within Dsui_0974 at 1000.974 kb on + strand at 1000.982 kb on - strand at 1001.049 kb on - strand at 1001.049 kb on - strand at 1001.049 kb on - strand at 1001.069 kb on + strand at 1001.083 kb on + strand at 1001.091 kb on - strand at 1001.101 kb on - strand at 1001.151 kb on - strand at 1001.180 kb on + strand at 1001.213 kb on - strand at 1001.234 kb on + strand at 1001.331 kb on + strand, within Dsui_0975 at 1001.331 kb on + strand, within Dsui_0975 at 1001.339 kb on - strand at 1001.351 kb on + strand, within Dsui_0975 at 1001.421 kb on - strand, within Dsui_0975 at 1001.466 kb on + strand, within Dsui_0975 at 1001.516 kb on - strand, within Dsui_0975 at 1001.566 kb on - strand, within Dsui_0975 at 1001.578 kb on - strand, within Dsui_0975 at 1001.651 kb on + strand, within Dsui_0975 at 1001.746 kb on + strand, within Dsui_0975 at 1001.770 kb on + strand, within Dsui_0975 at 1001.954 kb on + strand, within Dsui_0975 at 1002.051 kb on + strand, within Dsui_0975 at 1002.259 kb on + strand at 1002.600 kb on + strand, within Dsui_0976 at 1002.626 kb on + strand, within Dsui_0976 at 1002.689 kb on + strand, within Dsui_0976 at 1002.884 kb on - strand, within Dsui_0976 at 1002.906 kb on - strand, within Dsui_0976 at 1002.943 kb on - strand, within Dsui_0976 at 1002.955 kb on + strand, within Dsui_0976 at 1003.072 kb on - strand, within Dsui_0976 at 1003.157 kb on - strand, within Dsui_0976 at 1003.171 kb on + strand, within Dsui_0976 at 1003.172 kb on - strand at 1003.244 kb on - strand, within Dsui_0976 at 1003.301 kb on + strand, within Dsui_0976
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 1,000,172 - Dsui_0973 0.45 +0.5 1,000,230 - Dsui_0973 0.58 -0.5 1,000,308 - Dsui_0973 0.74 +0.5 1,000,363 + Dsui_0973 0.86 -0.2 1,000,383 - +0.5 1,000,682 + Dsui_0974 0.36 -1.7 1,000,806 + Dsui_0974 0.63 +0.5 1,000,904 + Dsui_0974 0.84 +0.5 1,000,919 - Dsui_0974 0.87 -2.1 1,000,974 + -0.5 1,000,982 - +0.5 1,001,049 - -0.5 1,001,049 - -1.5 1,001,049 - -0.5 1,001,069 + -1.5 1,001,083 + +0.5 1,001,091 - +0.5 1,001,101 - +0.5 1,001,151 - +0.5 1,001,180 + +0.5 1,001,213 - -1.1 1,001,234 + -1.5 1,001,331 + Dsui_0975 0.17 +0.5 1,001,331 + Dsui_0975 0.17 -0.5 1,001,339 - +0.5 1,001,351 + Dsui_0975 0.19 -0.5 1,001,421 - Dsui_0975 0.25 +0.5 1,001,466 + Dsui_0975 0.29 -0.5 1,001,516 - Dsui_0975 0.33 +0.5 1,001,566 - Dsui_0975 0.37 +0.5 1,001,578 - Dsui_0975 0.38 +0.5 1,001,651 + Dsui_0975 0.44 -1.1 1,001,746 + Dsui_0975 0.53 -1.1 1,001,770 + Dsui_0975 0.55 +1.1 1,001,954 + Dsui_0975 0.70 -3.1 1,002,051 + Dsui_0975 0.79 +1.8 1,002,259 + -1.1 1,002,600 + Dsui_0976 0.19 -1.5 1,002,626 + Dsui_0976 0.21 -1.2 1,002,689 + Dsui_0976 0.27 +0.5 1,002,884 - Dsui_0976 0.43 +0.5 1,002,906 - Dsui_0976 0.45 -0.5 1,002,943 - Dsui_0976 0.48 -1.5 1,002,955 + Dsui_0976 0.49 +0.5 1,003,072 - Dsui_0976 0.59 -0.5 1,003,157 - Dsui_0976 0.66 +0.5 1,003,171 + Dsui_0976 0.68 -0.5 1,003,172 - +0.5 1,003,244 - Dsui_0976 0.74 -2.1 1,003,301 + Dsui_0976 0.79 -0.2
Or see this region's nucleotide sequence