Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0963 and Dsui_0964 are separated by 1 nucleotides Dsui_0964 and Dsui_0965 are separated by 88 nucleotides Dsui_0965 and Dsui_0966 are separated by 219 nucleotides
Dsui_0963: Dsui_0963 - collagenase-like protease, at 988,587 to 989,498
_0963
Dsui_0964: Dsui_0964 - putative lipid carrier protein, at 989,500 to 989,997
_0964
Dsui_0965: Dsui_0965 - putative membrane protein, at 990,086 to 990,778
_0965
Dsui_0966: Dsui_0966 - methyl-accepting chemotaxis protein, at 990,998 to 993,025
_0966
Position (kb) 990
991 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 989.167 kb on - strand, within Dsui_0963 at 989.273 kb on + strand, within Dsui_0963 at 989.320 kb on + strand, within Dsui_0963 at 989.428 kb on - strand at 989.473 kb on + strand at 989.497 kb on + strand at 989.530 kb on - strand at 989.530 kb on - strand at 989.756 kb on + strand, within Dsui_0964 at 989.794 kb on - strand, within Dsui_0964 at 989.797 kb on + strand, within Dsui_0964 at 989.815 kb on - strand, within Dsui_0964 at 989.903 kb on - strand, within Dsui_0964 at 990.023 kb on - strand at 990.091 kb on - strand at 990.205 kb on + strand, within Dsui_0965 at 990.216 kb on + strand, within Dsui_0965 at 990.293 kb on + strand, within Dsui_0965 at 990.365 kb on + strand, within Dsui_0965 at 990.366 kb on + strand, within Dsui_0965 at 990.366 kb on + strand, within Dsui_0965 at 990.373 kb on - strand, within Dsui_0965 at 990.428 kb on - strand, within Dsui_0965 at 990.494 kb on - strand, within Dsui_0965 at 990.494 kb on - strand at 990.494 kb on - strand, within Dsui_0965 at 990.598 kb on + strand, within Dsui_0965 at 990.606 kb on - strand, within Dsui_0965 at 990.693 kb on - strand, within Dsui_0965 at 990.722 kb on + strand at 990.723 kb on - strand at 990.741 kb on - strand at 990.867 kb on - strand at 990.880 kb on - strand at 990.941 kb on + strand at 991.298 kb on + strand, within Dsui_0966 at 991.352 kb on + strand, within Dsui_0966 at 991.352 kb on + strand, within Dsui_0966 at 991.362 kb on + strand, within Dsui_0966 at 991.365 kb on - strand, within Dsui_0966 at 991.440 kb on + strand, within Dsui_0966 at 991.440 kb on + strand, within Dsui_0966 at 991.450 kb on + strand at 991.582 kb on - strand, within Dsui_0966 at 991.588 kb on - strand at 991.713 kb on - strand, within Dsui_0966 at 991.720 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 989,167 - Dsui_0963 0.64 -2.7 989,273 + Dsui_0963 0.75 +0.3 989,320 + Dsui_0963 0.80 +0.3 989,428 - -1.3 989,473 + -0.1 989,497 + -0.6 989,530 - -2.2 989,530 - -0.5 989,756 + Dsui_0964 0.51 -0.1 989,794 - Dsui_0964 0.59 +0.5 989,797 + Dsui_0964 0.60 -0.4 989,815 - Dsui_0964 0.63 -3.0 989,903 - Dsui_0964 0.81 -2.1 990,023 - -1.9 990,091 - -1.5 990,205 + Dsui_0965 0.17 -0.5 990,216 + Dsui_0965 0.19 -0.4 990,293 + Dsui_0965 0.30 -0.5 990,365 + Dsui_0965 0.40 -0.6 990,366 + Dsui_0965 0.40 -1.0 990,366 + Dsui_0965 0.40 -0.0 990,373 - Dsui_0965 0.41 -1.1 990,428 - Dsui_0965 0.49 +0.5 990,494 - Dsui_0965 0.59 -1.1 990,494 - +0.5 990,494 - Dsui_0965 0.59 -2.5 990,598 + Dsui_0965 0.74 -2.4 990,606 - Dsui_0965 0.75 -1.4 990,693 - Dsui_0965 0.88 -0.5 990,722 + -0.5 990,723 - -2.4 990,741 - -0.5 990,867 - +0.5 990,880 - +0.5 990,941 + +0.5 991,298 + Dsui_0966 0.15 -2.1 991,352 + Dsui_0966 0.17 -1.9 991,352 + Dsui_0966 0.17 -2.5 991,362 + Dsui_0966 0.18 -2.5 991,365 - Dsui_0966 0.18 -0.5 991,440 + Dsui_0966 0.22 -1.1 991,440 + Dsui_0966 0.22 -0.5 991,450 + -0.5 991,582 - Dsui_0966 0.29 -0.5 991,588 - +0.5 991,713 - Dsui_0966 0.35 -1.5 991,720 + +0.5
Or see this region's nucleotide sequence